Publications by authors named "Sagar Gupta"

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PTF-Vāc: An explainable and generative deep co-learning encoder-decoder system for ab initio discovery of plant transcription factor binding sites.
Sagar Gupta, Jyoti, Umesh Bhati, Veerbhan Kesarwani, Akanksha Sharma

Plant Commun· November 2025

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DMRU: generative deep learning to unravel condition-specific cytosine methylation in plants.
Sagar Gupta, Anchit Kumar, Veerbhan Kesarwani, Umesh Bhati, Ravi Shankar

Brief Bioinform· November 2025

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Targeting peptide antigens using a multiallelic MHC I-binding system.
Haotian Du, Leena Mallik, Daniel Hwang, Yi Sun, Chengzi Kaku, Sagar Gupta

Nat Biotechnol· October 2025

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A structure-guided approach to predict MHC-I restriction of T cell receptors for public antigens.
Sagar Gupta, Nikolaos G Sgourakis

Structure· September 2025

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Time series forecasting of chlorophyll-a concentrations in the Chesapeake Bay.
Sahil Gupta, Sagar Gupta

Sci Rep· August 2025

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Comprehensive analysis of computational approaches in plant transcription factors binding regions discovery.
Jyoti, Ritu, Sagar Gupta, Ravi Shankar

Heliyon· October 2024

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A structure-guided approach to predict MHC-I restriction of T cell receptors for public antigens.
Sagar Gupta, Nikolaos G Sgourakis

bioRxiv· June 2024

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PTFSpot: deep co-learning on transcription factors and their binding regions attains impeccable universality in plants.
Sagar Gupta, Veerbhan Kesarwani, Umesh Bhati, Jyoti, Ravi Shankar

Brief Bioinform· May 2024

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Structural principles of peptide-centric chimeric antigen receptor recognition guide therapeutic expansion.
Yi Sun, Tyler J Florio, Sagar Gupta, Michael C Young, Quinlen F Marshall

Sci Immunol· December 2023

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RBPLight: a computational tool for discovery of plant-specific RNA-binding proteins using light gradient boosting machine and ensemble of evolutionary features.
Upendra K Pradhan, Prabina K Meher, Sanchita Naha, Soumen Pal, Sagar Gupta, Ajit Gupta

Brief Funct Genomics· November 2023

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HLA3DB: comprehensive annotation of peptide/HLA complexes enables blind structure prediction of T cell epitopes.
Sagar Gupta, Santrupti Nerli, Sreeja Kutti Kandy, Glenn L Mersky, Nikolaos G Sgourakis

Nat Commun· October 2023

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Universal open MHC-I molecules for rapid peptide loading and enhanced complex stability across HLA allotypes.
Yi Sun, Michael C Young, Claire H Woodward, Julia N Danon, Hau V Truong, Sagar Gupta

Proc Natl Acad Sci U S A· June 2023

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Structural principles of peptide-centric Chimeric Antigen Receptor recognition guide therapeutic expansion.
Yi Sun, Tyler J Florio, Sagar Gupta, Michael C Young, Quinlen F Marshall

bioRxiv· May 2023

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miWords: transformer-based composite deep learning for highly accurate discovery of pre-miRNA regions across plant genomes.
Sagar Gupta, Ravi Shankar

Brief Bioinform· March 2023

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HLA3DB: comprehensive annotation of peptide/HLA complexes enables blind structure prediction of T cell epitopes.
Sagar Gupta, Santrupti Nerli, Sreeja Kutti Kandy, Glenn L Mersky, Nikolaos G Sgourakis

bioRxiv· March 2023

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Universal open MHC-I molecules for rapid peptide loading and enhanced complex stability across HLA allotypes.
Yi Sun, Michael C Young, Claire H Woodward, Julia N Danon, Hau Truong, Sagar Gupta

bioRxiv· March 2023

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Role of Alternative Elicitor Transporters in the Onset of Plant Host Colonization by 87-22.
Isolde M Francis, Danica Bergin, Benoit Deflandre, Sagar Gupta, Joren J C Salazar

Biology (Basel)· February 2023

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Variant analyses of candidate genes in orofacial clefts in multi-ethnic populations.
Mary Li, Joy Olotu, Carmen J Buxo-Martinez, Peter A Mossey, Deepti Anand, Sagar Gupta

Oral Dis· October 2022

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DeepPlnc: Bi-modal deep learning for highly accurate plant lncRNA discovery.
Ritu, Sagar Gupta, Nitesh Kumar Sharma, Ravi Shankar

Genomics· September 2022

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RBPSpot: Learning on appropriate contextual information for RBP binding sites discovery.
Nitesh Kumar Sharma, Sagar Gupta, Ashwani Kumar, Prakash Kumar, Upendra Kumar Pradhan

iScience· December 2021

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miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles.
Upendra Kumar Pradhan, Nitesh Kumar Sharma, Prakash Kumar, Ashwani Kumar, Sagar Gupta

PLoS One· November 2021

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Anti-Thymocyte Globulin Induced Acute Lung Injury in a Case of Renal Allograft Recipient.
Nimish Gupta, Sagar Gupta, Ritesh Mongha, Sanjay Aggarwal

Indian J Nephrol· September 2021

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Correction to: Retransplantation after post transplant lymphoproliferative disorder: overcoming the obstacles!
Pallavi Prasad, Dinesh Khullar, Nimish Gupta, Rahul Grover, Gagandeep Chhabra, Sagar Gupta

CEN Case Rep· November 2020

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Retransplantation after post transplant lymphoproliferative disorder: overcoming the obstacles!
Pallavi Prasad, Dinesh Khullar, Nimish Gupta, Rahul Grover, Gagandeep Chhabra, Sagar Gupta

CEN Case Rep· August 2020

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Photothermal therapy mediated by gum Arabic-conjugated gold nanoparticles suppresses liver preneoplastic lesions in mice.
Amira M Gamal-Eldeen, Dina Moustafa, Sherien M El-Daly, Enas A El-Hussieny, Samira Saleh, Sagar Gupta

J Photochem Photobiol B· October 2016

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