Publications by authors named "Sagar Khavnekar"

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Toward community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii.
Ron Kelley, Sagar Khavnekar, Ricardo D Righetto, Jessica Heebner, Martin Obr

Mol Cell· December 2025

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Sub-3 Å resolution protein structure determination by single-particle cryo-EM at 100 keV.
Dimple Karia, Adrian F Koh, Wen Yang, Victoria I Cushing, Benjamin Basanta, Sagar Khavnekar

Structure· October 2025

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An approach for coherent periodogram averaging of tilt-series data for improved contrast transfer function estimation.
Sagar Khavnekar, William Wan

FEBS Open Bio· August 2025

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In-cell architecture of the mitochondrial respiratory chain.
Florent Waltz, Ricardo D Righetto, Lorenz Lamm, Thalia Salinas-Giegé, Ron Kelley, Sagar Khavnekar

Science· March 2025

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: a software package for large-scale cryo-electron tomography data preprocessing, community data sharing and collaborative computing.
Sagar Khavnekar, Philipp S Erdmann, William Wan

J Appl Crystallogr· December 2024

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An approach for coherent periodogram averaging of tilt-series data for improved CTF estimation.
Sagar Khavnekar, William Wan

bioRxiv· October 2024

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TOMOMAN: a software package for large scale cryo-electron tomography data preprocessing, community data sharing, and collaborative computing.
Sagar Khavnekar, Philipp S Erdmann, William Wan

bioRxiv· August 2024

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CryoDRGN-ET: deep reconstructing generative networks for visualizing dynamic biomolecules inside cells.
Ramya Rangan, Ryan Feathers, Sagar Khavnekar, Adam Lerer, Jake D Johnston

Nat Methods· August 2024

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STOPGAP: an open-source package for template matching, subtomogram alignment and classification.
William Wan, Sagar Khavnekar, Jonathan Wagner

Acta Crystallogr D Struct Biol· May 2024

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STOPGAP, an open-source package for template matching, subtomogram alignment, and classification.
William Wan, Sagar Khavnekar, Jonathan Wagner

bioRxiv· December 2023

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Volumetric macromolecule identification in cryo-electron tomograms using capsule networks.
Noushin Hajarolasvadi, Vikram Sunkara, Sagar Khavnekar, Florian Beck, Robert Brandt

BMC Bioinformatics· August 2022

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Routine Collection of High-Resolution cryo-EM Datasets Using 200 KV Transmission Electron Microscope.
Adrian Koh, Sagar Khavnekar, Wen Yang, Dimple Karia, Dennis Cats

J Vis Exp· March 2022

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In situ cryo-electron tomography reveals gradient organization of ribosome biogenesis in intact nucleoli.
Philipp S Erdmann, Zhen Hou, Sven Klumpe, Sagar Khavnekar, Florian Beck

Nat Commun· September 2021

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Conformational dynamics of Peb4 exhibit "mother's arms" chain model: a molecular dynamics study.
Sarath Chandra Dantu, Sagar Khavnekar, Avinash Kale

J Biomol Struct Dyn· August 2017

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Structural insights into dynamics of RecU-HJ complex formation elucidates key role of NTR and stalk region toward formation of reactive state.
Sagar Khavnekar, Sarath Chandra Dantu, Svetlana Sedelnikova, Sylvia Ayora, John Rafferty

Nucleic Acids Res· January 2017

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Time-dependent X-ray diffraction studies on urea/hen egg white lysozyme complexes reveal structural changes that indicate onset of denaturation.
Tushar Raskar, Sagar Khavnekar, Madhusoodan Hosur

Sci Rep· August 2016

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