Publications by authors named "Samik Ghosh"

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MelAnalyze: fact-checking melatonin claims using large language models and natural language inference.
Nikitha Karkera, Samik Ghosh, Germaine Escames, Sucheendra K Palaniappan

BMC Med Inform Decis Mak· December 2025

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Precise and scalable metagenomic profiling with sample-tailored minimizer libraries.
Johan Nyström-Persson, Nishad Bapatdhar, Samik Ghosh

NAR Genom Bioinform· June 2025

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Noninvasive, label-free image approaches to predict multimodal molecular markers in pluripotency assessment.
Ryutaro Akiyoshi, Takeshi Hase, Mayuri Sathiyananthavel, Samik Ghosh, Hiroaki Kitano

Sci Rep· July 2024

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DTox: A deep neural network-based in visio lens for large scale toxicogenomics data.
Takeshi Hase, Samik Ghosh, Ken-Ichi Aisaki, Satoshi Kitajima, Jun Kanno

J Toxicol Sci· March 2024

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Enabling Personalization for Digital Cognitive Stimulation to Support Communication With People With Dementia: Pilot Intervention Study as a Prelude to AI Development.
Nick Hird, Tohmi Osaki, Samik Ghosh, Sucheendra K Palaniappan, Kiyoshi Maeda

JMIR Form Res· January 2024

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Impact of market-based home fortification with micronutrient powder on childhood anemia in Bangladesh: a modified stepped wedge design.
Haribondhu Sarma, Mahfuzur Rahman, Md Tariqujjaman, Mohammad Ashraful Islam, Mduduzi N N Mbuya, Samik Ghosh

Front Nutr· January 2024

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A subnational reproductive, maternal, newborn, child, and adolescent health and development atlas of India.
Carla Pezzulo, Natalia Tejedor-Garavito, Ho Man Theophilus Chan, Ilda Dreoni, David Kerr, Samik Ghosh

Sci Data· February 2023

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Large scale text mining for deriving useful insights: A case study focused on microbiome.
Syed Ashif Jardary Al Ahmed, Nishad Bapatdhar, Bipin Pradeep Kumar, Samik Ghosh, Ayako Yachie

Front Physiol· August 2022

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AI-driven laboratory workflows enable operation in the age of social distancing.
Diego Marescotti, Chandrasekaran Narayanamoorthy, Filipe Bonjour, Ken Kuwae, Luc Graber, Samik Ghosh

SLAS Technol· June 2022

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Evaluating the impact of a countrywide, market-based roll-out of multiple micronutrient supplementation on low birth weight in Bangladesh: protocol for a two-arm, quasi-experimental and mixed-methods evaluation study.
Muttaquina Hossain, Kazi Ishtiaque Sanin, Md Ahshanul Haque, Mduduzi N N Mbuya, Samik Ghosh

BMJ Open· May 2022

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Toxicity Analysis of Pentachlorophenol Data with a Bioinformatics Tool Set.
Natalia Polouliakh, Takeshi Hase, Samik Ghosh, Hiroaki Kitano

Methods Mol Biol· April 2022

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Effectiveness of community-based treatment programs for treatment of uncomplicated severe acute malnourished children aged 6-59 months using locally produced nutrient dense foods: protocol for a multicentric longitudinal quasi-experimental study.
Praveen Kumar, Rajesh Kumar Sinha, Abner Daniel, Hemang Shah, Raja Sriswan, Samik Ghosh

BMC Nutr· December 2021

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Artificial intelligence-based computational framework for drug-target prioritization and inference of novel repositionable drugs for Alzheimer's disease.
Shingo Tsuji, Takeshi Hase, Ayako Yachie-Kinoshita, Taiko Nishino, Samik Ghosh

Alzheimers Res Ther· May 2021

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A Geometric Clustering Tool (AGCT) to robustly unravel the inner cluster structures of time-series gene expressions.
Richard Nock, Natalia Polouliakh, Frank Nielsen, Keigo Oka, Carlin R Connell, Samik Ghosh

PLoS One· September 2020

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Multi-dimensional computational pipeline for large-scale deep screening of compound effect assessment: an in silico case study on ageing-related compounds.
Vipul Gupta, Alina Crudu, Yukiko Matsuoka, Samik Ghosh, Roger Rozot

NPJ Syst Biol Appl· April 2020

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Lenvatinib plus anti-PD-1 antibody combination treatment activates CD8+ T cells through reduction of tumor-associated macrophage and activation of the interferon pathway.
Yu Kato, Kimiyo Tabata, Takayuki Kimura, Ayako Yachie-Kinoshita, Yoichi Ozawa, Samik Ghosh

PLoS One· December 2019

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Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis.
Natalia Polouliakh, Paul Horton, Kazuhiro Shibanai, Kodai Takata, Vanessa Ludwig, Samik Ghosh

BMC Genomics· September 2018

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Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry.
Etienne Caron, Romain Roncagalli, Takeshi Hase, Witold E Wolski, Meena Choi, Samik Ghosh

Cell Rep· March 2017

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Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure.
Stéphanie Boué, Thomas Exner, Samik Ghosh, Vincenzo Belcastro, Joh Dokler

F1000Res· January 2017

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A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data.
Yongli Hu, Takeshi Hase, Hui Peng Li, Shyam Prabhakar, Hiroaki Kitano, Samik Ghosh

BMC Genomics· December 2016

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Digital health revolution: perfect storm or perfect opportunity for pharmaceutical R&D?
Nick Hird, Samik Ghosh, Hiroaki Kitano

Drug Discov Today· June 2016

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Network analyses based on comprehensive molecular interaction maps reveal robust control structures in yeast stress response pathways.
Eiryo Kawakami, Vivek K Singh, Kazuko Matsubara, Takashi Ishii, Yukiko Matsuoka, Samik Ghosh

NPJ Syst Biol Appl· January 2016

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Elucidation of the molecular mechanisms underlying adverse reactions associated with a kinase inhibitor using systems toxicology.
Takahiro Amemiya, Masashi Honma, Yoshiaki Kariya, Samik Ghosh, Hiroaki Kitano

NPJ Syst Biol Appl· September 2015

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Oscillation of cAMP and Ca(2+) in cardiac myocytes: a systems biology approach.
Takehisa Kamide, Satoshi Okumura, Samik Ghosh, Yoko Shinoda, Yasumasa Mototani

J Physiol Sci· March 2015

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Modeling and simulation using CellDesigner.
Yukiko Matsuoka, Akira Funahashi, Samik Ghosh, Hiroaki Kitano

Methods Mol Biol· January 2015

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