Publications by authors named "Samo Zakotnik"

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Misdetection of frameshifts in SARS-CoV-2 genomes: need for additional harmonisation and efficient monitoring of data workflows.
Rok Kogoj, Mauro Petrillo, Samo Zakotnik, Alen Suljič, Miša Korva

Bioinformatics· October 2025

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Development and performance evaluation of a clinical metagenomics approach for identifying pathogens in the whole blood from patients with undifferentiated fever.
Jan Slunečko, Rok Kogoj, Samo Zakotnik, Alen Suljič, Nataša Knap

Front Cell Infect Microbiol· October 2025

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MetaAll: integrative bioinformatics workflow for analysing clinical metagenomic data.
Martin Bosilj, Alen Suljič, Samo Zakotnik, Jan Slunečko, Rok Kogoj

Brief Bioinform· September 2024

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Sequencing analysis of SARS-CoV-2 cases in Slovenian long-term care facilities to support outbreak control.
Rok Kogoj, Manja Grašek, Alen Suljič, Samo Zakotnik, Doroteja Vlaj

Front Public Health· May 2024

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Efficient SARS-CoV-2 variant detection and monitoring with Spike Screen next-generation sequencing.
Alen Suljič, Tomaž Mark Zorec, Samo Zakotnik, Doroteja Vlaj, Rok Kogoj

Brief Bioinform· May 2024

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Enrichment of SARS-CoV-2 sequence from nasopharyngeal swabs whilst identifying the nasal microbiome.
Abdulrahman Alrezaihi, Rebekah Penrice-Randal, Xiaofeng Dong, Tessa Prince, Nadine Randle, Samo Zakotnik

J Clin Virol· April 2024

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Review of virological methods for laboratory diagnosis and characterization of monkeypox virus (MPXV): lessons learned from the 2022 Mpox outbreak.
Katarina Resman Rus, Samo Zakotnik, Martin Sagadin, Marko Kolenc, Lucijan Skubic

Acta Dermatovenerol Alp Pannonica Adriat· March 2024

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Hantavirus Pulmonary Syndrome Caused by Puumala Orthohantavirus-A Case Report and Literature Review.
Marija Santini, Jelena Ljubić, Nikola Šoštar, Tatjana Vilibić-Čavlek, Maja Bogdanić, Samo Zakotnik

Microorganisms· December 2023

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Molecular epidemiology of the 2022 monkeypox virus outbreak in Slovenia.
Katarina Resman Rus, Samo Zakotnik, Martin Sagadin, Nataša Knap, Alen Suljič

Acta Dermatovenerol Alp Pannonica Adriat· September 2023

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Intrahost Monkeypox Virus Genome Variation in Patient with Early Infection, Finland, 2022.
Hanna Vauhkonen, Hannimari Kallio-Kokko, Eija Hiltunen-Back, Lasse Lönnqvist, Jaana Leppäaho-Lakka, Samo Zakotnik

Emerg Infect Dis· March 2023

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Complete Genome Sequencing of Tick-Borne Encephalitis Virus Directly from Clinical Samples: Comparison of Shotgun Metagenomic and Targeted Amplicon-Based Sequencing.
Samo Zakotnik, Nataša Knap, Petra Bogovič, Tomaž Mark Zorec, Mario Poljak

Viruses· June 2022

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Transmission of SARS-CoV-2 from Human to Domestic Ferret.
Jožko Račnik, Ana Kočevar, Brigita Slavec, Miša Korva, Katarina Resman Rus, Samo Zakotnik

Emerg Infect Dis· September 2021

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West Nile Virus in Slovenia.
Nataša Knap, Miša Korva, Vladimir Ivović, Katja Kalan, Mateja Jelovšek, Samo Zakotnik

Viruses· July 2020

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Complete Coding Sequence of a Chikungunya Virus Strain Imported into Slovenia from Thailand in Late 2018.
Samo Zakotnik, Misa Korva, Nataša Knap, Barbara Robnik, Nina Gorišek Miksić

Microbiol Resour Announc· September 2019

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