Publications by authors named "Samuel Minot"

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sp. nov., isolated from a human colon tumor adheres to colonic epithelial cells and induces IL-8 secretion.
Martha A Zepeda-Rivera, Yannick Eisele, Alexander Baryiames, Hanrui Wu, Claudia Mengoni, Samuel S Minot

Gut Microbes· December 2025

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Effect of fecal microbiota transplantation on gut microbiota functional profile in recipients of allogeneic hematopoietic cell transplantation.
Maryam Ebadi, Swetha Reddi, Liliia Senyshyn, Samuel S Minot, Ted Gooley

Gut Microbes· December 2025

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Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research.
Jonathan L Golob, Tomiko T Oskotsky, Alice S Tang, Alennie Roldan, Verena Chung, Samuel S Minot

Cell Rep Med· December 2025

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The type VI secretion system governs strain maintenance in a wild mammalian gut microbiome.
Beth A Shen, Kyle L Asfahl, Bentley Lim, Savannah K Bertolli, Samuel S Minot

bioRxiv· December 2025

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Gut bacteria-derived sphingolipids alter innate immune responses to oral cholera vaccine antigens.
Denise Chac, Frederick J Heller, Hasan Al Banna, M Hasanul Kaisar, Susan M Markiewicz, Samuel S Minot

Nat Commun· December 2025

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Dental plaque microbiota following allogeneic hematopoietic cell transplantation and risk of chronic graft-versus-host disease.
Hakan Gem, Maryam Ebadi, Gale Sebastian, Rania Abasaeed, Michele Lloid, Samuel S Minot

Haematologica· September 2025

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TCR2HLA: calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes.
Koshlan Mayer-Blackwell, Anastasia Minervina, Mikhail Pogorelyy, Puneet Rawat, Melanie R Shapiro, Samuel Minot

bioRxiv· July 2025

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Different Patterns of Oral Mucositis and Microbiota Injury After Total Body Irradiation- Versus Chemotherapy-Based Myeloablative Allogeneic Hematopoietic Cell Transplantation.
Maryam Ebadi, Hakan Gem, Gale Sebastian, Rania Abasaeed, Michele Lloid, Samuel Minot

Adv Radiat Oncol· June 2025

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Distal gut colonization by oral bacteria during intensive chemotherapy: direct evidence from strain-level analysis of paired samples.
Suravi Raychaudhuri, Hakan Gem, Kevin Chung, Jeffrey S McLean, Kristopher A Kerns, Samuel S Minot

NPJ Biofilms Microbiomes· May 2025

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Deep learning imaging analysis to identify bacterial metabolic states associated with carcinogen production.
Maysam Orouskhani, Sarwesh Rauniyar, Norma Morella, Daniel Lachance, Samuel S Minot

Discov Imaging· March 2025

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Fecal microbiota transplantation to prevent acute graft-versus-host disease: pre-planned interim analysis of donor effect.
Swetha Reddi, Liliia Senyshyn, Maryam Ebadi, Daniel Podlesny, Samuel S Minot

Nat Commun· January 2025

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Community assembly modeling of microbial evolution within Barrett's esophagus and esophageal adenocarcinoma.
Caitlin Guccione, Igor Sfiligoi, Antonio Gonzalez, Justin P Shaffer, Mariya Kazachkova, Samuel S Minot

bioRxiv· January 2025

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Syntrophic bacterial and host-microbe interactions in bacterial vaginosis.
Elliot M Lee, Sujatha Srinivasan, Samuel O Purvine, Tina L Fiedler, Owen P Leiser, Samuel S Minot

ISME J· January 2025

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Oral acute graft-versus-host disease.
Farzad Teymouri, Gale Sebastian, Hakan Gem, Samuel S Minot, Armin Rashidi

EJHaem· December 2024

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A sex-dependent salivary bacterium influences oral mucositis severity after allogeneic hematopoietic cell transplantation.
Hakan Gem, Maryam Ebadi, Gale Sebastian, Rania Abasaeed, Michele Lloid, Samuel S Minot

NPJ Biofilms Microbiomes· November 2024

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VMAP: Vaginal Microbiome Atlas during Pregnancy.
Antonio Parraga-Leo, Tomiko T Oskotsky, Boris Oskotsky, Camilla Wibrand, Alennie Roldan, Samuel S Minot

JAMIA Open· October 2024

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Colorectal cancer-associated bacteria are broadly distributed in global microbiomes and drivers of precancerous change.
Samuel S Minot, Naisi Li, Harini Srinivasan, Jessica L Ayers, Ming Yu

Sci Rep· October 2024

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Species- and subspecies-level characterization of health-associated bacterial consortia that colonize the human gut during infancy.
Samuel S Minot, Koshlan Mayer-Blackwell, Andrew Fiore-Gartland, Andrew Johnson, Steven Self

Gut Microbes· October 2024

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A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche.
Martha Zepeda-Rivera, Samuel S Minot, Heather Bouzek, Hanrui Wu, Aitor Blanco-Míguez

Nature· April 2024

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Scalable single-cell profiling of chromatin modifications with sciCUT&Tag.
Derek H Janssens, Jacob E Greene, Steven J Wu, Christine A Codomo, Samuel S Minot

Nat Protoc· January 2024

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Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research.
Jonathan L Golob, Tomiko T Oskotsky, Alice S Tang, Alennie Roldan, Verena Chung, Samuel S Minot

Cell Rep Med· January 2024

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Multi-cohort shotgun metagenomic analysis of oral and gut microbiota overlap in healthy adults.
Armin Rashidi, Hakan Gem, Jeffrey S McLean, Kristopher Kerns, David R Dean, Samuel Minot

Sci Data· January 2024

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Strain-level characterization of health-associated bacterial consortia that colonize the human gut during infancy.
Samuel S Minot, Koshlan Mayer-Blackwell, Andrew Fiore-Gartland, Andrew Johnson, Steven Self

medRxiv· December 2023

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MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies.
Samuel S Minot, Bailey Garb, Alennie Roldan, Alice S Tang, Tomiko T Oskotsky

Cell Rep Methods· November 2023

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Microbiome-based risk prediction in incident heart failure: a community challenge.
Pande Putu Erawijantari, Ece Kartal, José Liñares-Blanco, Teemu D Laajala, Lily Elizabeth Feldman, Samuel Minot

medRxiv· October 2023

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