Publications by authors named "Sandeep Chakraborty"

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An Alternative Technique of Performing the Bidirectional Superior Cavopulmonary Connection without Cardiopulmonary Bypass.
Sachin Talwar, Sandeep Chakraborty, Niwin George, Amitabh Satsangi, Akshaya Kumar Bisoi

World J Pediatr Congenit Heart Surg· July 2025

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Right-sided partial anomalous pulmonary venous connection with intact atrial septum and small left atrium: in a dextroverted heart.
Sandeep Chakraborty, Bharath Veerabhadraiah, Mayank Yadav, Amitabh Satsangi, Milind Padmakar Hote

Indian J Thorac Cardiovasc Surg· April 2025

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High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome.
Annarita Marrano, Monica Britton, Paulo A Zaini, Aleksey V Zimin, Rachael E Workman, Sandeep Chakraborty

Gigascience· May 2020

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Additive-color multi-harmonic generation microscopy for simultaneous label-free differentiation of plaques, tangles, and neuronal axons.
Sandeep Chakraborty, Sheng-Tse Chen, Yang-Ting Hsiao, Ming-Jang Chiu, Chi-Kuang Sun

Biomed Opt Express· February 2020

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The plant-based chimeric antimicrobial protein SlP14a-PPC20 protects tomato against bacterial wilt disease caused by Ralstonia solanacearum.
Tâmara P Morais, Paulo A Zaini, Sandeep Chakraborty, Hossein Gouran, Camila P Carvalho

Plant Sci· March 2019

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Sequencing a  ×  hybrid yields high-quality genome assemblies of parental species.
Tingting Zhu, Le Wang, Frank M You, Juan C Rodriguez, Karin R Deal, Sandeep Chakraborty

Hortic Res· March 2019

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Elucidation of microstructural changes in leaves during senescence using spectral domain optical coherence tomography.
Tulsi Anna, Sandeep Chakraborty, Chia-Yi Cheng, Vishal Srivastava, Arthur Chiou

Sci Rep· February 2019

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Saturated two-photon excitation fluorescence microscopy for the visualization of cerebral neural networks at millimeters deep depth.
Sandeep Chakraborty, Szu-Yu Lee, Jye-Chang Lee, Chen-Tung Yen, Chi-Kuang Sun

J Biophotonics· January 2019

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Genomic Variation Among and Within Six Species.
Kristian A Stevens, Keith Woeste, Sandeep Chakraborty, Marc W Crepeau, Charles A Leslie

G3 (Bethesda)· July 2018

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Inconclusive studies on possible CRISPR-Cas off-targets should moderate expectations about enzymes that have evolved to be non-specific.
Sandeep Chakraborty

J Biosci· June 2018

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Molecular Profiling of Pierce's Disease Outlines the Response Circuitry of to Infection.
Paulo A Zaini, Rafael Nascimento, Hossein Gouran, Dario Cantu, Sandeep Chakraborty

Front Plant Sci· June 2018

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Inhibitory effects of curcumin and cyclocurcumin in 1-methyl-4-phenylpyridinium (MPP) induced neurotoxicity in differentiated PC12 cells.
Sandeep Chakraborty, Artashes Karmenyan, Jin-Wu Tsai, Arthur Chiou

Sci Rep· December 2017

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YeATSAM analysis of the walnut and chickpea transcriptome reveals key genes undetected by current annotation tools.
Sandeep Chakraborty, Pedro J Martínez-García, Abhaya M Dandekar

F1000Res· November 2016

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The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols.
Pedro J Martínez-García, Marc W Crepeau, Daniela Puiu, Daniel Gonzalez-Ibeas, Jeanne Whalen, Sandeep Chakraborty

Plant J· September 2016

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The Secreted Protease PrtA Controls Cell Growth, Biofilm Formation and Pathogenicity in Xylella fastidiosa.
Hossein Gouran, Hyrum Gillespie, Rafael Nascimento, Sandeep Chakraborty, Paulo A Zaini

Sci Rep· August 2016

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Sequence/structural analysis of xylem proteome emphasizes pathogenesis-related proteins, chitinases and β-1, 3-glucanases as key players in grapevine defense against Xylella fastidiosa.
Sandeep Chakraborty, Rafael Nascimento, Paulo A Zaini, Hossein Gouran, Basuthkar J Rao

PeerJ· June 2016

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Computational analysis of perturbations in the post-fusion Dengue virus envelope protein highlights known epitopes and conserved residues in the Zika virus.
Sandeep Chakraborty

F1000Res· June 2016

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Deep RNA-Seq profile reveals biodiversity, plant-microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues.
Sandeep Chakraborty, Monica Britton, P J Martínez-García, Abhaya M Dandekar

AMB Express· March 2016

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The interaction affinity between vascular cell adhesion molecule-1 (VCAM-1) and very late antigen-4 (VLA-4) analyzed by quantitative FRET.
Sandeep Chakraborty, Shih-Yang Hu, Shu-Han Wu, Artashes Karmenyan, Arthur Chiou

PLoS One· February 2016

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YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut.
Sandeep Chakraborty, Monica Britton, Jill Wegrzyn, Timothy Butterfield, Pedro José Martínez-García

F1000Res· February 2016

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Corrigendum: The Type II Secreted Lipase/Esterase LesA is a Key Virulence Factor Required for Xylella fastidiosa Pathogenesis in Grapevines.
Rafael Nascimento, Hossein Gouran, Sandeep Chakraborty, Hyrum W Gillespie, Hebréia O Almeida-Souza

Sci Rep· February 2016

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The Type II Secreted Lipase/Esterase LesA is a Key Virulence Factor Required for Xylella fastidiosa Pathogenesis in Grapevines.
Rafael Nascimento, Hossein Gouran, Sandeep Chakraborty, Hyrum W Gillespie, Hebréia O Almeida-Souza

Sci Rep· January 2016

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Quantification of the Metabolic State in Cell-Model of Parkinson's Disease by Fluorescence Lifetime Imaging Microscopy.
Sandeep Chakraborty, Fang-Shin Nian, Jin-Wu Tsai, Artashes Karmenyan, Arthur Chiou

Sci Rep· January 2016

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Enzymatic attributes of an l-isoaspartyl methyltransferase from and its role in cell survival.
Shakri Banerjee, Trina Dutta, Sagar Lahiri, Shinjinee Sengupta, Anushila Gangopadhyay, Sandeep Chakraborty

Biochem Biophys Rep· December 2015

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Characterizing alpha helical properties of Ebola viral proteins as potential targets for inhibition of alpha-helix mediated protein-protein interactions.
Sandeep Chakraborty, Basuthkar J Rao, Bjarni Asgeirsson, Abhaya Dandekar

F1000Res· March 2015

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