Publications by authors named "Sandhya Xirasagar"

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Perturbations of the T-cell receptor repertoire in response to SARS-CoV-2 in immunocompetent and immunocompromised individuals.
Ottavia M Delmonte, Cihan Oguz, Kerry Dobbs, Katherine Myint-Hpu, Boaz Palterer, Sandhya Xirasagar

J Allergy Clin Immunol· June 2024

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Clinical exome sequencing of 1000 families with complex immune phenotypes: Toward comprehensive genomic evaluations.
Morgan N Similuk, Jia Yan, Rajarshi Ghosh, Andrew J Oler, Luis M Franco, Sandhya Xirasagar

J Allergy Clin Immunol· October 2022

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ImmunoTyper-SR: A computational approach for genotyping immunoglobulin heavy chain variable genes using short-read data.
Michael K B Ford, Ananth Hari, Oscar Rodriguez, Junyan Xu, Justin Lack, Sandhya Xirasagar

Cell Syst· October 2022

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PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology.
Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J Oler, Sandhya Xirasagar

J Biomed Inform· May 2022

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ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data.
Michael Ford, Ananth Hari, Oscar Rodriguez, Junyan Xu, Justin Lack, Sandhya Xirasagar

bioRxiv· February 2022

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PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology.
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew Oler, Sandhya Xirasagar

Bioinformatics· July 2021

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The Papillomavirus Episteme: a major update to the papillomavirus sequence database.
Koenraad Van Doorslaer, Zhiwen Li, Sandhya Xirasagar, Piet Maes, David Kaminsky

Nucleic Acids Res· January 2017

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The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis.
Koenraad Van Doorslaer, Qina Tan, Sandhya Xirasagar, Sandya Bandaru, Vivek Gopalan

Nucleic Acids Res· January 2013

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CEBS--Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data.
Michael Waters, Stanley Stasiewicz, B Alex Merrick, Kenneth Tomer, Pierre Bushel, Sandhya Xirasagar

Nucleic Acids Res· January 2008

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Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application.
Sandhya Xirasagar, Scott F Gustafson, Cheng-Cheng Huang, Qinyan Pan, Jennifer Fostel

Bioinformatics· April 2006

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CEBS object model for systems biology data, SysBio-OM.
Sandhya Xirasagar, Scott Gustafson, B Alex Merrick, Kenneth B Tomer, Stanley Stasiewicz

Bioinformatics· September 2004

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