Publications by authors named "Sandor Suhai"

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Towards understanding the tandem mass spectra of protonated oligopeptides. 2: The proline effect in collision-induced dissociation of protonated Ala-Ala-Xxx-Pro-Ala (Xxx = Ala, Ser, Leu, Val, Phe, and Trp).
Christian Bleiholder, Sándor Suhai, Alex G Harrison, Béla Paizs

J Am Soc Mass Spectrom· June 2011

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Gas-phase structure and fragmentation pathways of singly protonated peptides with N-terminal arginine.
Benjamin J Bythell, István P Csonka, Sándor Suhai, Douglas F Barofsky, Béla Paizs

J Phys Chem B· November 2010

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Proton-driven amide bond-cleavage pathways of gas-phase peptide ions lacking mobile protons.
Benjamin J Bythell, Sándor Suhai, Arpád Somogyi, Béla Paizs

J Am Chem Soc· October 2009

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DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.
Endre Sebestyén, Tibor Nagy, Sándor Suhai, Endre Barta

BMC Bioinformatics· June 2009

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Long-distance proton transfer with a break in the bacteriorhodopsin active site.
Prasad Phatak, Jan S Frähmcke, Marius Wanko, Michael Hoffmann, Paul Strodel, Sándor Suhai

J Am Chem Soc· May 2009

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Sequence-scrambling fragmentation pathways of protonated peptides.
Christian Bleiholder, Sandra Osburn, Todd D Williams, Sándor Suhai, Michael Van Stipdonk

J Am Chem Soc· December 2008

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Key role of active-site water molecules in bacteriorhodopsin proton-transfer reactions.
Ana-Nicoleta Bondar, Jerome Baudry, Sándor Suhai, Stefan Fischer, Jeremy C Smith

J Phys Chem B· November 2008

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Automatic detection of exonic splicing enhancers (ESEs) using SVMs.
Britta Mersch, Alexander Gepperth, Sándor Suhai, Agnes Hotz-Wagenblatt

BMC Bioinformatics· September 2008

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Vibrational spectroscopy and conformational structure of protonated polyalanine peptides isolated in the gas phase.
Timothy D Vaden, Tjalling S J A de Boer, John P Simons, Lavina C Snoek, Sándor Suhai

J Phys Chem A· May 2008

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Microhydration of the guanine-cytosine (GC) base pair in the neutral and anionic radical states: a density functional study.
Anil Kumar, Michael D Sevilla, Sandor Suhai

J Phys Chem B· April 2008

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SERpredict: detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements.
Britta Mersch, Noa Sela, Gil Ast, Sándor Suhai, Agnes Hotz-Wagenblatt

BMC Genet· November 2007

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Stepwise solvation of an amino acid: the appearance of zwitterionic structures.
Martine N Blom, Isabelle Compagnon, Nick C Polfer, Gert von Helden, Gerard Meijer, Sandor Suhai

J Phys Chem A· August 2007

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Infrared spectroscopy and theoretical studies on gas-phase protonated leu-enkephalin and its fragments: direct experimental evidence for the mobile proton.
Nick C Polfer, Jos Oomens, Sandor Suhai, Béla Paizs

J Am Chem Soc· May 2007

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Suppression of the back proton-transfer from Asp85 to the retinal Schiff base in bacteriorhodopsin: a theoretical analysis of structural elements.
Ana-Nicoleta Bondar, Sándor Suhai, Stefan Fischer, Jeremy C Smith, Marcus Elstner

J Struct Biol· March 2007

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Isotope labeling and theoretical study of the formation of a3* ions from protonated tetraglycine.
Travis Cooper, Erach Talaty, Jerod Grove, Michael Van Stipdonk, Sándor Suhai

J Am Soc Mass Spectrom· December 2006

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CAFTAN: a tool for fast mapping, and quality assessment of cDNAs.
Coral del Val, Vladimir Yurjevich Kuryshev, Karl-Heinz Glatting, Peter Ernst, Agnes Hotz-Wagenblatt, Sandor Suhai

BMC Bioinformatics· October 2006

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Revising the proton affinity scale of the naturally occurring alpha-amino acids.
Christian Bleiholder, Sándor Suhai, Béla Paizs

J Am Soc Mass Spectrom· September 2006

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Scrambling of sequence information in collision-induced dissociation of peptides.
Alex G Harrison, Alex B Young, Christian Bleiholder, Sandor Suhai, Béla Paizs

J Am Chem Soc· August 2006

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Genomic analysis of Xenopus organizer function.
Andrew L Hufton, Arunachalam Vinayagam, Sándor Suhai, Julie C Baker

BMC Dev Biol· June 2006

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Binding of gold clusters with DNA base pairs: a density functional study of neutral and anionic GC-Aun and AT-Aun (n = 4, 8) complexes.
Anil Kumar, P C Mishra, Sandor Suhai

J Phys Chem A· June 2006

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GOPET: a tool for automated predictions of Gene Ontology terms.
Arunachalam Vinayagam, Coral del Val, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai

BMC Bioinformatics· March 2006

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Discovery of two novel, small-molecule inhibitors of DNA methylation.
Pawel Siedlecki, Regine Garcia Boy, Tanja Musch, Bodo Brueckner, Sandor Suhai

J Med Chem· January 2006

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Spectroscopic and theoretical evidence for oxazolone ring formation in collision-induced dissociation of peptides.
Nick C Polfer, Jos Oomens, Sándor Suhai, Béla Paizs

J Am Chem Soc· December 2005

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Tuning of retinal twisting in bacteriorhodopsin controls the directionality of the early photocycle steps.
Ana-Nicoleta Bondar, Stefan Fischer, Sandor Suhai, Jeremy C Smith

J Phys Chem B· August 2005

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Adiabatic electron affinities of the polyhydrated adenine-thymine base pair: a density functional study.
Anil Kumar, P C Mishra, Sándor Suhai

J Phys Chem A· May 2005

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