Publications by authors named "Sankar Basu"

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Use of AI-methods over MD simulations in the sampling of conformational ensembles in IDPs.
Souradeep Sil, Ishita Datta, Sankar Basu

Front Mol Biosci· April 2025

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Intrinsic Disorder and Other Malleable Arsenals of Evolved Protein Multifunctionality.
Asifa Aftab, Souradeep Sil, Seema Nath, Anirneya Basu, Sankar Basu

J Mol Evol· December 2024

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Landscape of intrinsically disordered proteins in mental disorder diseases.
Xinwu Zhang, Xixi Song, Guangchun Hu, Yaqing Yang, Ruotong Liu, Sankar Basu

Comput Struct Biotechnol J· December 2024

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Combining Complementarity and Binding Energetics in the Assessment of Protein Interactions: EnCPdock-A Practical Manual.
Gargi Biswas, Debasish Mukherjee, Sankar Basu

J Comput Biol· August 2024

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Modified host defence peptide GF19 slows TNT-mediated spread of corneal herpes simplex virus serotype I infection.
Neethi C Thathapudi, Natalia Callai-Silva, Kamal Malhotra, Sankar Basu, Mozhgan Aghajanzadeh-Kiyaseh

Sci Rep· February 2024

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EnCPdock: a web-interface for direct conjoint comparative analyses of complementarity and binding energetics in inter-protein associations.
Gargi Biswas, Debasish Mukherjee, Nalok Dutta, Prithwi Ghosh, Sankar Basu

J Mol Model· July 2023

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Phosphorylcholine and KR12-Containing Corneal Implants in HSV-1-Infected Rabbit Corneas.
Kamal Malhotra, Oleksiy Buznyk, Mohammad Mirazul Islam, Elle Edin, Sankar Basu

Pharmaceutics· June 2023

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Editorial: From the hydrophobic core to the globular-disorder interface: New challenges and insights into protein design.
Sankar Basu, Devlina Chakravarty, Qingzhen Hou, Vladimir N Uversky

Front Mol Biosci· February 2023

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Can the jigsaw puzzle model of protein folding re-assemble a hydrophobic core?
Gargi Biswas, Semanti Ghosh, Sankar Basu, Dhananjay Bhattacharyya, Alok Kumar Datta

Proteins· July 2022

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Capturing a Crucial 'Disorder-to-Order Transition' at the Heart of the Coronavirus Molecular Pathology-Triggered by Highly Persistent, Interchangeable Salt-Bridges.
Sourav Roy, Prithwi Ghosh, Abhirup Bandyopadhyay, Sankar Basu

Vaccines (Basel)· February 2022

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BRANEart: Identify Stability Strength and Weakness Regions in Membrane Proteins.
Sankar Basu, Simon S Assaf, Fabian Teheux, Marianne Rooman, Fabrizio Pucci

Front Bioinform· December 2021

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Special Issue on 'Coronavirus: Vaccines and Other Therapeutics' (2020-2021).
Sankar Basu

Vaccines (Basel)· September 2021

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Plausible blockers of Spike RBD in SARS-CoV2-molecular design and underlying interaction dynamics from high-level structural descriptors.
Sankar Basu, Devlina Chakravarty, Dhananjay Bhattacharyya, Pampa Saha, Hirak K Patra

J Mol Model· May 2021

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Criticality in the conformational phase transition among self-similar groups in intrinsically disordered proteins: Probed by salt-bridge dynamics.
Abhirup Bandyopadhyay, Sankar Basu

Biochim Biophys Acta Proteins Proteom· October 2020

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DelPhi Suite: New Developments and Review of Functionalities.
Chuan Li, Zhe Jia, Arghya Chakravorty, Swagata Pahari, Yunhui Peng, Sankar Basu

J Comput Chem· October 2019

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A comprehensive computational study of amino acid interactions in membrane proteins.
Mame Ndew Mbaye, Qingzhen Hou, Sankar Basu, Fabian Teheux, Fabrizio Pucci

Sci Rep· August 2019

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Structural Perspective on Revealing and Altering Molecular Functions of Genetic Variants Linked with Diseases.
Yunhui Peng, Emil Alexov, Sankar Basu

Int J Mol Sci· January 2019

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DelPhiPKa: Including salt in the calculations and enabling polar residues to titrate.
Swagata Pahari, Lexuan Sun, Sankar Basu, Emil Alexov

Proteins· December 2018

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Inner-View of Nanomaterial Incited Protein Conformational Changes: Insights into Designable Interaction.
Arka Mukhopadhyay, Sankar Basu, Santiswarup Singha, Hirak K Patra

Research (Wash D C)· September 2018

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Salt-bridge dynamics in intrinsically disordered proteins: A trade-off between electrostatic interactions and structural flexibility.
Sankar Basu, Parbati Biswas

Biochim Biophys Acta Proteins Proteom· July 2018

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CP: the complementarity plot for docking of proteins: implementing multi-dielectric continuum electrostatics.
Sankar Basu

J Mol Model· December 2017

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Nitric oxide sensing by chlorophyll a.
Abhishek Bhattacharya, Pranjal Biswas, Puranjoy Kar, Piya Roychoudhury, Sankar Basu

Anal Chim Acta· September 2017

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Salt-bridge networks within globular and disordered proteins: characterizing trends for designable interactions.
Sankar Basu, Debasish Mukharjee

J Mol Model· July 2017

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Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins.
Sankar Basu, Fredrik Söderquist, Björn Wallner

J Comput Aided Mol Des· May 2017

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RNAHelix: computational modeling of nucleic acid structures with Watson-Crick and non-canonical base pairs.
Dhananjay Bhattacharyya, Sukanya Halder, Sankar Basu, Debasish Mukherjee, Prasun Kumar

J Comput Aided Mol Des· February 2017

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