Publications by authors named "Sankaran Sandhya"

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Editorial: Strategies for mitigating zoonotic influenza outbreaks: a comprehensive preparedness approach.
Sneha Vishwanath, Hazel Stewart, Sankaran Sandhya

Front Public Health· September 2025

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Bioinformatic exploration reveals features of tenpIN family of type III toxin-antitoxin systems in bacteria and viruses.
Kavyashree Nadig, Sankaran Sandhya, Mahavir Singh

Sci Rep· July 2025

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The alteration of structural network upon transient association between proteins studied using graph theory.
Vasam Manjveekar Prabantu, Himani Tandon, Sankaran Sandhya, Ramanathan Sowdhamini, Narayanaswamy Srinivasan

Proteins· January 2025

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Computational tools to study RNA-protein complexes.
Sneha Bheemireddy, Sankaran Sandhya, Narayanaswamy Srinivasan, Ramanathan Sowdhamini

Front Mol Biosci· October 2022

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Profiles of Natural and Designed Protein-Like Sequences Effectively Bridge Protein Sequence Gaps: Implications in Distant Homology Detection.
Gayatri Kumar, Narayanaswamy Srinivasan, Sankaran Sandhya

Methods Mol Biol· May 2022

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Identification, functional characterization, assembly and structure of ToxIN type III toxin-antitoxin complex from E. coli.
Parthasarathy Manikandan, Sankaran Sandhya, Kavyashree Nadig, Souradip Paul, Narayanaswamy Srinivasan

Nucleic Acids Res· February 2022

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Sequence Divergence and Functional Specializations of the Ancient Spliceosomal SF3b: Implications in Flexibility and Adaptations of the Multi-Protein Complex.
Arangasamy Yazhini, Narayanaswamy Srinivasan, Sankaran Sandhya

Front Genet· January 2022

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Comparative Analysis of Structural and Dynamical Features of Ribosome Upon Association With mRNA Reveals Potential Role of Ribosomal Proteins.
Sneha Bheemireddy, Sankaran Sandhya, Narayanaswamy Srinivasan

Front Mol Biosci· August 2021

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Rewards of divergence in sequences, 3-D structures and dynamics of yeast and human spliceosome SF3b complexes.
Arangasamy Yazhini, Sankaran Sandhya, Narayanaswamy Srinivasan

Curr Res Struct Biol· June 2021

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Signatures of conserved and unique molecular features in Afrotheria.
Arangasamy Yazhini, Narayanaswamy Srinivasan, Sankaran Sandhya

Sci Rep· January 2021

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Artificial protein sequences enable recognition of vicinal and distant protein functional relationships.
Gayatri Kumar, Narayanaswamy Srinivasan, Sankaran Sandhya

Proteins· December 2020

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Molecular and Structural Basis of Cross-Reactivity in Toxin-Antitoxin Systems.
Himani Tandon, Akhila Melarkode Vattekatte, Narayanaswamy Srinivasan, Sankaran Sandhya

Toxins (Basel)· July 2020

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Bioinformatic and mutational studies of related toxin-antitoxin pairs in predict and identify key functional residues.
Himani Tandon, Arun Sharma, Saruchi Wadhwa, Raghavan Varadarajan, Ramandeep Singh, Sankaran Sandhya

J Biol Chem· June 2019

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Domain architecture of BAF250a reveals the ARID and ARM-repeat domains with implication in function and assembly of the BAF remodeling complex.
Sankaran Sandhya, Aditi Maulik, Malyasree Giri, Mahavir Singh

PLoS One· March 2019

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Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin-antitoxin pair.
Himani Tandon, Arun Sharma, Sankaran Sandhya, Narayanaswamy Srinivasan, Ramandeep Singh

Sci Rep· February 2019

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Use of designed sequences in protein structure recognition.
Gayatri Kumar, Richa Mudgal, Narayanaswamy Srinivasan, Sankaran Sandhya

Biol Direct· May 2018

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Probing the Most Stable Isomer of Zirconium Bis(phenoxy-imine) Cation: A Computational Investigation.
Soumen Saha, Masayoshi Takayanagi, Kentaro Matsumoto, Sandhya Karakkadparambil Sankaran, Yuichi Tanaka

J Phys Chem A· March 2018

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Protein sequence design and its applications.
Sankaran Sandhya, Richa Mudgal, Gayatri Kumar, Ramanathan Sowdhamini, Narayanaswamy Srinivasan

Curr Opin Struct Biol· April 2016

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De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods.
Richa Mudgal, Sankaran Sandhya, Nagasuma Chandra, Narayanaswamy Srinivasan

Biol Direct· July 2015

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CHEXVIS: a tool for molecular channel extraction and visualization.
Talha Bin Masood, Sankaran Sandhya, Nagasuma Chandra, Vijay Natarajan

BMC Bioinformatics· April 2015

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NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.
Richa Mudgal, Sankaran Sandhya, Gayatri Kumar, Ramanathan Sowdhamini, Nagasuma R Chandra

Nucleic Acids Res· January 2015

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Mapping post-translational modifications of mammalian testicular specific histone variant TH2B in tetraploid and haploid germ cells and their implications on the dynamics of nucleosome structure.
Satya Krishna Pentakota, Sankaran Sandhya, Arun P Sikarwar, Nagasuma Chandra, Manchanahalli R Satyanarayana Rao

J Proteome Res· December 2014

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Structural Annotation of the Mycobacterium tuberculosis Proteome.
Nagasuma Chandra, Sankaran Sandhya, Praveen Anand

Microbiol Spectr· April 2014

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Filling-in void and sparse regions in protein sequence space by protein-like artificial sequences enables remarkable enhancement in remote homology detection capability.
Richa Mudgal, Ramanathan Sowdhamini, Nagasuma Chandra, Narayanaswamy Srinivasan, Sankaran Sandhya

J Mol Biol· February 2014

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Improved detection of remote homologues using cascade PSI-BLAST: influence of neighbouring protein families on sequence coverage.
Swati Kaushik, Eshita Mutt, Ajithavalli Chellappan, Sandhya Sankaran, Narayanaswamy Srinivasan

PLoS One· September 2013

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