Publications by authors named "Sara Y Cheng"

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Configurational Entropy of Folded Proteins and Its Importance for Intrinsically Disordered Proteins.
Meili Liu, Akshaya K Das, James Lincoff, Sukanya Sasmal, Sara Y Cheng

Int J Mol Sci· March 2021

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Data showing the lipid conformations and membrane binding behaviors of beta-amyloid fibrils in phase-separated cholesterol-enriched lipid domains with and without glycolipid and oxidized cholesterol from coarse-grained molecular dynamics simulations.
Sara Y Cheng, Yiyi Cao, Marzieh Rouzbehani, Kwan H Cheng

Data Brief· June 2020

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Coarse-grained MD simulations reveal beta-amyloid fibrils of various sizes bind to interfacial liquid-ordered and liquid-disordered regions in phase separated lipid rafts with diverse membrane-bound conformational states.
Sara Y Cheng, Yiyi Cao, Marzieh Rouzbehani, Kwan H Cheng

Biophys Chem· May 2020

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Polarizable Force Fields for Biomolecular Simulations: Recent Advances and Applications.
Zhifeng Jing, Chengwen Liu, Sara Y Cheng, Rui Qi, Brandon D Walker

Annu Rev Biophys· May 2019

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LNA Thymidine Monomer Enables Differentiation of the Four Single-Nucleotide Variants by Melting Temperature.
Judy M Obliosca, Sara Y Cheng, Yu-An Chen, Mariana F Llanos, Yen-Liang Liu

J Am Chem Soc· May 2017

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Capturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics Simulations.
David R Bell, Sara Y Cheng, Heber Salazar, Pengyu Ren

Sci Rep· April 2017

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Data supporting beta-amyloid dimer structural transitions and protein-lipid interactions on asymmetric lipid bilayer surfaces using MD simulations on experimentally derived NMR protein structures.
Sara Y Cheng, George Chou, Creighton Buie, Mark W Vaughn, Campbell Compton, Kwan H Cheng

Data Brief· June 2016

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Maximally asymmetric transbilayer distribution of anionic lipids alters the structure and interaction with lipids of an amyloidogenic protein dimer bound to the membrane surface.
Sara Y Cheng, George Chou, Creighton Buie, Mark W Vaughn, Campbell Compton, Kwan H Cheng

Chem Phys Lipids· March 2016

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Lipid insertion domain unfolding regulates protein orientational transition behavior in a lipid bilayer.
Kwan Hon Cheng, Liming Qiu, Sara Y Cheng, Mark W Vaughn

Biophys Chem· November 2015

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Characterization of 3D Voronoi tessellation nearest neighbor lipid shells provides atomistic lipid disruption profile of protein containing lipid membranes.
Sara Y Cheng, Hai V Duong, Campbell Compton, Mark W Vaughn, Hoa Nguyen, Kwan H Cheng

Biophys Chem· March 2015

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Hydration Free Energy from Orthogonal Space Random Walk and Polarizable Force Field.
Jayvee R Abella, Sara Y Cheng, Qiantao Wang, Wei Yang, Pengyu Ren

J Chem Theory Comput· July 2014

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