Publications by authors named "Sean P Gordon"

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The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum.
Li Lei, Sean P Gordon, Lifeng Liu, Nir Sade, John T Lovell

G3 (Bethesda)· December 2023

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Identification of Candidate Susceptibility Genes to f. sp. in Wheat.
Eva C Henningsen, Vahid Omidvar, Rafael Della Coletta, Jean-Michel Michno, Erin Gilbert, Sean P Gordon

Front Plant Sci· April 2021

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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors.
Sean P Gordon, Bruno Contreras-Moreira, Joshua J Levy, Armin Djamei, Angelika Czedik-Eysenberg

Nat Commun· July 2020

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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution.
Sean P Gordon, Joshua J Levy, John P Vogel

BMC Genomics· July 2019

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RDH1 suppresses adiposity by promoting brown adipose adaptation to fasting and re-feeding.
Charles R Krois, Marta G Vuckovic, Priscilla Huang, Claire Zaversnik, Conan S Liu, Sean P Gordon

Cell Mol Life Sci· June 2019

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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate.
Pip B Wilson, Jared C Streich, Kevin D Murray, Steve R Eichten, Riyan Cheng, Sean P Gordon

Genetics· January 2019

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The genomic landscape of molecular responses to natural drought stress in Panicum hallii.
John T Lovell, Jerry Jenkins, David B Lowry, Sujan Mamidi, Avinash Sreedasyam, Sean P Gordon

Nat Commun· December 2018

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Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon.
Yann Bourgeois, Christoph Stritt, Jean-Claude Walser, Sean P Gordon, John P Vogel

Plant J· October 2018

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Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes.
Rubén Sancho, Carlos P Cantalapiedra, Diana López-Alvarez, Sean P Gordon, John P Vogel

New Phytol· June 2018

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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon.
Christoph Stritt, Sean P Gordon, Thomas Wicker, John P Vogel, Anne C Roulin

Genome Biol Evol· January 2018

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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Sean P Gordon, Bruno Contreras-Moreira, Daniel P Woods, David L Des Marais, Diane Burgess

Nat Commun· December 2017

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Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection.
Mon Mandy Hsia, Ronan O'Malley, Amy Cartwright, Rita Nieu, Sean P Gordon

Plant J· August 2017

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Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei.
Vinh Ha Dinh Thi, Olivier Coriton, Isabelle Le Clainche, Dominique Arnaud, Sean P Gordon

PLoS One· July 2017

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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species.
Bruno Contreras-Moreira, Carlos P Cantalapiedra, María J García-Pereira, Sean P Gordon, John P Vogel

Front Plant Sci· February 2017

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Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon.
Daniel P Woods, Ryland Bednarek, Frédéric Bouché, Sean P Gordon, John P Vogel

Plant Physiol· January 2017

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A complete toolset for the study of and sp. as a fungal-temperate grass pathosystem.
Franziska Rabe, Jason Bosch, Alexandra Stirnberg, Tilo Guse, Lisa Bauer, Sean P Gordon

Elife· November 2016

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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.
Sean P Gordon, Elizabeth Tseng, Asaf Salamov, Jiwei Zhang, Xiandong Meng

PLoS One· May 2016

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Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.
Sean P Gordon, Henry Priest, David L Des Marais, Wendy Schackwitz, Melania Figueroa

Plant J· August 2014

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Generation and characterization of the Western Regional Research Center Brachypodium T-DNA insertional mutant collection.
Jennifer N Bragg, Jiajie Wu, Sean P Gordon, Mara E Guttman, Roger Thilmony

PLoS One· March 2013

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Cytokinin signaling as a positional cue for patterning the apical-basal axis of the growing Arabidopsis shoot meristem.
Vijay S Chickarmane, Sean P Gordon, Paul T Tarr, Marcus G Heisler, Elliot M Meyerowitz

Proc Natl Acad Sci U S A· March 2012

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Regeneration in plants and animals: dedifferentiation, transdifferentiation, or just differentiation?
Kaoru Sugimoto, Sean P Gordon, Elliot M Meyerowitz

Trends Cell Biol· April 2011

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Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem.
Sean P Gordon, Vijay S Chickarmane, Carolyn Ohno, Elliot M Meyerowitz

Proc Natl Acad Sci U S A· September 2009

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Pattern formation during de novo assembly of the Arabidopsis shoot meristem.
Sean P Gordon, Marcus G Heisler, G Venugopala Reddy, Carolyn Ohno, Pradeep Das

Development· October 2007

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Unravelling developmental dynamics: transient intervention and live imaging in plants.
G Venugopala Reddy, Sean P Gordon, Elliot M Meyerowitz

Nat Rev Mol Cell Biol· June 2007

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Characterization of interaction between cationic lipid-oligonucleotide complexes and cellular membrane lipids using confocal imaging and fluorescence correlation spectroscopy.
Sean Patrick Gordon, Svitlana Berezhna, Dag Scherfeld, Nicoletta Kahya, Petra Schwille

Biophys J· January 2005

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