Publications by authors named "Sebastian Bittrich"

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RCSB Protein Data Bank: Delivering integrative structures alongside experimental structures and computed structure models.
Brinda Vallat, Yana Rose, Dennis W Piehl, Jose M Duarte, Sebastian Bittrich

Nucleic Acids Res· November 2025

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rcsb-api: Python Toolkit for Streamlining Access to RCSB Protein Data Bank APIs.
Dennis W Piehl, Brinda Vallat, Ivana Truong, Habiba Morsy, Rusham Bhatt, Sebastian Bittrich

J Mol Biol· August 2025

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MolViewSpec: a Mol* extension for describing and sharing molecular visualizations.
Adam Midlik, Sebastian Bittrich, Jennifer R Fleming, Sreenath Nair, Sameer Velankar

Nucleic Acids Res· July 2025

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Visualizing and analyzing 3D biomolecular structures using Mol* at RCSB.org: Influenza A H5N1 virus proteome case study.
Sebastian Bittrich, Alexander S Rose, David Sehnal, Jose M Duarte, Yana Rose

Protein Sci· April 2025

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Multi-scale structural similarity embedding search across entire proteomes.
Joan Segura, Ruben Sanchez-Garcia, Sebastian Bittrich, Yana Rose, Stephen K Burley

bioRxiv· March 2025

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Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank.
Stephen K Burley, Rusham Bhatt, Charmi Bhikadiya, Chunxiao Bi, Alison Biester, Sebastian Bittrich

Nucleic Acids Res· January 2025

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Describing and Sharing Molecular Visualizations Using the MolViewSpec Toolkit.
Sebastian Bittrich, Adam Midlik, Mihaly Varadi, Sameer Velankar, Stephen K Burley

Curr Protoc· July 2024

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RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments.
Sebastian Bittrich, Joan Segura, Jose M Duarte, Stephen K Burley, Yana Rose

Bioinformatics· June 2024

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RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins.
Joan Segura, Yana Rose, Chunxiao Bi, Jose Duarte, Stephen K Burley, Sebastian Bittrich

Front Bioinform· December 2023

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RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances.
Sebastian Bittrich, Charmi Bhikadiya, Chunxiao Bi, Henry Chao, Jose M Duarte

J Mol Biol· July 2023

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RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.
Stephen K Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao

Nucleic Acids Res· January 2023

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RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D.
Stephen K Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao

Protein Sci· December 2022

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Assessing PDB macromolecular crystal structure confidence at the individual amino acid residue level.
Chenghua Shao, Sebastian Bittrich, Sijian Wang, Stephen K Burley

Structure· October 2022

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RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies.
Joan Segura, Yana Rose, Sebastian Bittrich, Stephen K Burley, Jose M Duarte

Bioinformatics· June 2022

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RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB.
Sebastian Bittrich, Yana Rose, Joan Segura, Robert Lowe, John D Westbrook

Bioinformatics· February 2022

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RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D.
Stephen K Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Li Chen

Protein Sci· January 2022

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Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures.
David Sehnal, Sebastian Bittrich, Mandar Deshpande, Radka Svobodová, Karel Berka

Nucleic Acids Res· July 2021

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RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive.
Yana Rose, Jose M Duarte, Robert Lowe, Joan Segura, Chunxiao Bi, Sebastian Bittrich

J Mol Biol· May 2021

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RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.
Stephen K Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Li Chen

Nucleic Acids Res· January 2021

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Real-time structural motif searching in proteins using an inverted index strategy.
Sebastian Bittrich, Stephen K Burley, Alexander S Rose

PLoS Comput Biol· December 2020

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BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management.
David Sehnal, Sebastian Bittrich, Sameer Velankar, Jaroslav Koča, Radka Svobodová

PLoS Comput Biol· October 2020

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The structural basis of the genetic code: amino acid recognition by aminoacyl-tRNA synthetases.
Florian Kaiser, Sarah Krautwurst, Sebastian Salentin, V Joachim Haupt, Christoph Leberecht, Sebastian Bittrich

Sci Rep· July 2020

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StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map.
Sebastian Bittrich, Michael Schroeder, Dirk Labudde

Sci Rep· December 2019

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Structural change in GadD2 of Listeria monocytogenes field isolates supports nisin resistance.
Maik Szendy, Stefan Kalkhof, Sebastian Bittrich, Florian Kaiser, Christoph Leberecht

Int J Food Microbiol· September 2019

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Application of an interpretable classification model on Early Folding Residues during protein folding.
Sebastian Bittrich, Marika Kaden, Christoph Leberecht, Florian Kaiser, Thomas Villmann

BioData Min· January 2019

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