Publications by authors named "Sefer Baday"

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Synthesis, biological evaluation and molecular docking of novel 2-pyrazoline-1-carboxamides as anti-Alzheimer agents.
Fatih Tok, Funda Aleyna Özer, Zeynep Sude Kuzu, Yusuf Sıcak, Fatih Kemaloğlu, Sefer Baday

Future Med Chem· December 2025

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Colchicine Modulates the Actin Cytoskeleton by Direct Binding to the Monomer and Facilitating Polymerization.
Ebru Haciosmanoglu Aldogan, Başak Günçer, Sefer Baday, Bilge Özerman Edis, Zsolt Mártonfalvi

FASEB J· October 2025

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Structure-based mechanism of RyR channel operation by calcium and magnesium ions.
Alexandra Zahradníková, Jana Pavelková, Miroslav Sabo, Sefer Baday, Ivan Zahradník

PLoS Comput Biol· April 2025

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Accelerating Molecular Docking using Machine Learning Methods.
Abdulsalam Y Bande, Sefer Baday

Mol Inform· June 2024

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Depolymerization of actin filaments by Cucurbitacin I through binding G-actin.
Ebru Haciosmanoglu Aldogan, Kemal Alper Önsü, Cemil Can Saylan, Başak Günçer, Sefer Baday

Food Sci Nutr· February 2024

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Optimization of CHARMM force field parameters for ryanodine receptor inhibitory drug dantrolene using FFTK and FFParam.
Saliha Nur Uludag, Cemil Can Saylan, Adem Tekin, Sefer Baday

J Mol Model· January 2024

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The iron(III) and nickel(II) complexes with tetradentate thiosemicarbazones. Synthesis, experimental, theoretical characterization, and antiviral effect against SARS-CoV-2.
Belkis Atasever Arslan, Büşra Kaya, Onur Şahin, Sefer Baday, Cemil Can Saylan

J Mol Struct· December 2021

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Optimization of CHARMM force field parameters of a prostate cancer drug enzalutamide.
Sefer Baday

J Mol Graph Model· May 2020

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Phylogenetic, structural, and functional characterization of AMT3;1, an ammonium transporter induced by mycorrhization among model grasses.
Sally Koegel, Delphine Mieulet, Sefer Baday, Odile Chatagnier, Moritz F Lehmann

Mycorrhiza· October 2017

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Supramolecular Peptide Nanofiber Morphology Affects Mechanotransduction of Stem Cells.
Elif Arslan, Meryem Hatip Koc, Ozge Uysal, Begum Dikecoglu, Ahmet E Topal, Sefer Baday

Biomacromolecules· October 2017

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Hierarchical Self-Assembly of Histidine-Functionalized Peptide Amphiphiles into Supramolecular Chiral Nanostructures.
Meryem Hatip Koc, Goksu Cinar Ciftci, Sefer Baday, Valeria Castelletto, Ian W Hamley

Langmuir· August 2017

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Trisubstituted-Imidazoles Induce Apoptosis in Human Breast Cancer Cells by Targeting the Oncogenic PI3K/Akt/mTOR Signaling Pathway.
Chakrabhavi Dhananjaya Mohan, V Srinivasa, Shobith Rangappa, Lewis Mervin, Surender Mohan, Sefer Baday

PLoS One· August 2016

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Catch-bond mechanism of the bacterial adhesin FimH.
Maximilian M Sauer, Roman P Jakob, Jonathan Eras, Sefer Baday, Deniz Eriş

Nat Commun· March 2016

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Mechanism of NH4(+) Recruitment and NH3 Transport in Rh Proteins.
Sefer Baday, Esam A Orabi, Shihao Wang, Guillaume Lamoureux, Simon Bernèche

Structure· August 2015

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A PDI-catalyzed thiol-disulfide switch regulates the production of hydrogen peroxide by human Ero1.
Thomas Ramming, Masaki Okumura, Shingo Kanemura, Sefer Baday, Julia Birk

Free Radic Biol Med· June 2015

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Functional asymmetry within the Sec61p translocon.
Erhan Demirci, Tina Junne, Sefer Baday, Simon Bernèche, Martin Spiess

Proc Natl Acad Sci U S A· November 2013

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Different hydration patterns in the pores of AmtB and RhCG could determine their transport mechanisms.
Sefer Baday, Shihao Wang, Guillaume Lamoureux, Simon Bernèche

Biochemistry· October 2013

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Ammonium transporters achieve charge transfer by fragmenting their substrate.
Shihao Wang, Esam A Orabi, Sefer Baday, Simon Bernèche, Guillaume Lamoureux

J Am Chem Soc· June 2012

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Determination of pair-wise inter-residue interaction forces from folding pathways and their implementation in coarse-grained folding prediction.
Sefer Baday, Burak Erman, Yaman Arkun

Phys Chem Chem Phys· March 2009

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Optimum folding pathways for growing protein chains.
Serife Senturk, Sefer Baday, Yaman Arkun, Burak Erman

Phys Biol· November 2007

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