Publications by authors named "Shaked Afik"

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Long-term Remission After Cilta-Cel in Multiple Myeloma Is Linked to Diverse T Cells and Low Myeloid Suppression.
Junia Vieira Dos Santos, David T Melnekoff, Adolfo Aleman, Tarek H Mouhieddine, Rocio Montes de Oca, Shaked Afik

Blood Adv· November 2025

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The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans.

Science· May 2022

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Reconstructing B-cell receptor sequences from short-read single-cell RNA sequencing with BRAPeS.
Shaked Afik, Gabriel Raulet, Nir Yosef

Life Sci Alliance· August 2019

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Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon.
Elisa Donnard, Pranitha Vangala, Shaked Afik, Sean McCauley, Anetta Nowosielska

Cell Syst· March 2018

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Targeted reconstruction of T cell receptor sequence from single cell RNA-seq links CDR3 length to T cell differentiation state.
Shaked Afik, Kathleen B Yates, Kevin Bi, Samuel Darko, Jernej Godec

Nucleic Acids Res· September 2017

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Defining the 5΄ and 3΄ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq.
Shaked Afik, Osnat Bartok, Maxim N Artyomov, Alexander A Shishkin, Sabah Kadri

Nucleic Acids Res· June 2017

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Novel Observations From Next-Generation RNA Sequencing of Highly Purified Human Adult and Fetal Islet Cell Subsets.
David M Blodgett, Anetta Nowosielska, Shaked Afik, Susanne Pechhold, Anthony J Cura

Diabetes· September 2015

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Clk post-transcriptional control denoises circadian transcription both temporally and spatially.
Immanuel Lerner, Osnat Bartok, Victoria Wolfson, Jerome S Menet, Uri Weissbein, Shaked Afik

Nat Commun· May 2015

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Differentiation of human parthenogenetic pluripotent stem cells reveals multiple tissue- and isoform-specific imprinted transcripts.
Yonatan Stelzer, Shiran Bar, Osnat Bartok, Shaked Afik, Daniel Ronen

Cell Rep· April 2015

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BREX is a novel phage resistance system widespread in microbial genomes.
Tamara Goldfarb, Hila Sberro, Eyal Weinstock, Ofir Cohen, Shany Doron, Shaked Afik

EMBO J· January 2015

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