Publications by authors named "Shangyi Luo"

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Comprehensive molecular characterization of Rho GTPases and their regulators across human cancers.
Shangyi Luo, Shupei Qiao, Li Liu, Ying Jia, Yajing Zhang

Int J Cancer· December 2025

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ProtPSP: Determination of Protein Phosphorylation Sites with the Protein Large Language Model.
Bifeng Guan, Lei Guo, Thomas Ka-Yam Lam, Zhuang Xiong, Shangyi Luo

ACS Omega· December 2025

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Spatial heterogeneity reveals an evolutionary signature predicting therapeutic response and clinical outcomes in hepatocellular carcinoma.
Shangyi Luo, Li Liu, Yang Sun, Jian Shi, Yajing Zhang

Front Bioinform· September 2025

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De-MSI: A Deep Learning-Based Data Denoising Method to Enhance Mass Spectrometry Imaging by Leveraging the Chemical Prior Knowledge.
Lei Guo, Chengyi Xie, Xin Diao, Thomas Ka Yam Lam, Yanhui Zhong, Shangyi Luo

Anal Chem· September 2025

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Unraveling Spatial Heterogeneity in Mass Spectrometry Imaging Data with GraphMSI.
Lei Guo, Peisi Xie, Xionghui Shen, Thomas Ka Yam Lam, Lingli Deng, Shangyi Luo

Adv Sci (Weinh)· February 2025

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Integrated Analysis of scRNA-Seq and Bulk RNA-Seq Reveals Metabolic Reprogramming of Liver Cancer and Establishes a Prognostic Risk Model.
Zhuang Xiong, Lizhi Li, Guoliang Wang, Lei Guo, Shangyi Luo

Genes (Basel)· June 2024

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A transcriptomic intratumour heterogeneity-free signature overcomes sampling bias in prognostic risk classification for hepatocellular carcinoma.
Shangyi Luo, Ying Jia, Yajing Zhang, Xue Zhang

JHEP Rep· June 2023

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Comprehensive analysis of intratumoural heterogeneity of somatic copy number alterations in diffuse glioma reveals clonality-dependent prognostic patterns.
Shangyi Luo, Yajing Zhang, Ying Jia, Xue Zhang

Neuropathol Appl Neurobiol· October 2022

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Telomere maintenance mechanism dysregulation serves as an early predictor of adjuvant therapy response and a potential therapeutic target in human cancers.
Yajing Zhang, Shangyi Luo, Ying Jia, Xue Zhang

Int J Cancer· July 2022

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IDH clonal heterogeneity segregates a subgroup of non-1p/19q codeleted gliomas with unfavourable clinical outcome.
Shangyi Luo, Shiwei Zhu, Jianlong Liao, Yajing Zhang, Xiaobo Hou, Tao Luo

Neuropathol Appl Neurobiol· April 2021

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Clonal tumor mutations in homologous recombination genes predict favorable clinical outcome in ovarian cancer treated with platinum-based chemotherapy.
Shangyi Luo, Yajing Zhang, Yiran Yang, Shiwei Zhu, Wei Liu

Gynecol Oncol· July 2020

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Revealing clonality and subclonality of driver genes for clinical survival benefits in breast cancer.
Yujia Lan, Erjie Zhao, Shangyi Luo, Yun Xiao, Xia Li

Breast Cancer Res Treat· May 2019

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Sex difference of mutation clonality in diffuse glioma evolution.
Hongyi Zhang, Jianlong Liao, Xinxin Zhang, Erjie Zhao, Xin Liang, Shangyi Luo

Neuro Oncol· February 2019

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Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability.
Yulan Deng, Shangyi Luo, Chunyu Deng, Tao Luo, Wenkang Yin

Brief Bioinform· January 2019

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A pan-cancer atlas of cancer hallmark-associated candidate driver lncRNAs.
Yulan Deng, Shangyi Luo, Xinxin Zhang, Chaoxia Zou, Huating Yuan

Mol Oncol· November 2018

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SEECancer: a resource for somatic events in evolution of cancer genome.
Hongyi Zhang, Shangyi Luo, Xinxin Zhang, Jianlong Liao, Fei Quan

Nucleic Acids Res· January 2018

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