Publications by authors named "Shankar Subramaniam"

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Methadone alters transcriptional programs associated with synapse formation in human cortical organoids.
Ila Dwivedi, Andrew B Caldwell, Dan Zhou, Wei Wu, Shankar Subramaniam, Gabriel G Haddad

Transl Psychiatry· May 2023

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Immunogenomic diversity of triple-negative breast cancers in obese and non-obese black and white women.
Fokhrul Hossain, Denise Danos, Jovanny Zabaleta, Xiao-Cheng Wu, Luis Del Valle, Shankar Subramaniam

NPJ Breast Cancer· November 2025

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The Data Distillery: A Graph Framework for Semantic Integration and Querying of Biomedical Data.
Taha Mohseni Ahooyi, Benjamin Stear, J Alan Simmons, Vincent T Metzger, Praveen Kumar, Shankar Subramaniam

bioRxiv· October 2025

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Integrated multiomics reveals inflammation-driven excessive erythrocytosis in subjects with Monge's disease.
Priti Azad, Andrew B Caldwell, Francisco C Villafuerte, Shamieh Banihani, Dan Zhou, Shankar Subramaniam

bioRxiv· October 2025

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Author Correction: A universal language for finding mass spectrometry data patterns.
Tito Damiani, Alan K Jarmusch, Allegra T Aron, Daniel Petras, Vanessa V Phelan, Shankar Subramaniam

Nat Methods· September 2025

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Assessment of Cognitive Performance and Hearing Impairment of Indian Power Loom Employees through Electroencephalogram Signal Analysis and Audiometry.
Naveen Kumar Raju, Saravanan Arunachalam, Shankar Subramaniam, Ramya Suresh

Noise Health· September 2025

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A novel subtyping method for TNBC with implications for prognosis and therapy.
Zahra Mesrizadeh, Kavitha Mukund, Jovanny Zabaleta, Luis Del Valle, Jerneja Tomsic, Shankar Subramaniam

bioRxiv· July 2025

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An autoencoder learning method for predicting breast cancer subtypes.
Zahra Rostami, Kavitha Mukund, Maryam Masnadi-Shirazi, Shankar Subramaniam

PLoS One· July 2025

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A universal language for finding mass spectrometry data patterns.
Tito Damiani, Alan K Jarmusch, Allegra T Aron, Daniel Petras, Vanessa V Phelan, Shankar Subramaniam

Nat Methods· June 2025

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Fulvestrant Versus Anastrozole in Endocrine Therapy-Naïve Women With Hormone Receptor-Positive Advanced Breast Cancer: Final Overall Survival in the Phase III FALCON Trial.
John F R Robertson, Zhimin Shao, Shinzaburo Noguchi, Igor Bondarenko, Lawrence Panasci, Shankar Subramaniam

J Clin Oncol· May 2025

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Topological Data Analysis Reveals a Subgroup of Luminal B Breast Cancer.
Zahra Rostami, David Fooshee, Gunnar Carlsson, Shankar Subramaniam

IEEE Open J Eng Med Biol· May 2025

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Playbook workflow builder: Interactive construction of bioinformatics workflows.
Daniel J B Clarke, John Erol Evangelista, Zhuorui Xie, Giacomo B Marino, Anna I Byrd, Shankar Subramaniam

PLoS Comput Biol· April 2025

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Erratum: Fulvestrant Versus Anastrozole in Endocrine Therapy-Naïve Women With Hormone Receptor-Positive Advanced Breast Cancer: Final Overall Survival in the Phase III FALCON Trial.
John F R Robertson, Zhimin Shao, Shinzaburo Noguchi, Igor Bondarenko, Lawrence Panasci, Shankar Subramaniam

J Clin Oncol· March 2025

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Spatially distinct cellular and molecular landscapes define prognosis in triple negative breast cancer.
Kavitha Mukund, Darya Veraksa, David Frankhouser, Lixin Yang, Jerneja Tomsic, Shankar Subramaniam

bioRxiv· February 2025

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System vaccinology analysis of predictors and mechanisms of antibody response durability to multiple vaccines in humans.
Mario Cortese, Thomas Hagan, Nadine Rouphael, Sheng-Yang Wu, Xia Xie, Shankar Subramaniam

Nat Immunol· January 2025

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Integrative multiomics reveals common endotypes across PSEN1, PSEN2, and APP mutations in familial Alzheimer's disease.
Phoebe Valdes, Andrew B Caldwell, Qing Liu, Michael Q Fitzgerald, Srinivasan Ramachandran, Shankar Subramaniam

Alzheimers Res Ther· January 2025

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Modeling enzyme competition in eicosanoid metabolism in macrophage cells using a cybernetic framework.
Sana Khanum, Shakti Gupta, Mano R Maurya, Rubesh Raja, Lina Aboulmouna, Shankar Subramaniam

J Lipid Res· December 2024

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Investigation of Noise Induced Hearing Loss Among Power Loom Industry Workers in Tamil Nadu, India.
Shankar Subramaniam, Abbas Ganesan, Naveenkumar Raju, Nithyaprakash Rajavel, Maheswari Chenniappan

Indian J Otolaryngol Head Neck Surg· December 2024

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Correction to: Strength and durability performance of modified cement‑based concrete incorporated immobilized bacteria.
Mani Dhivakar Karthick, Gobi Subburaj Rampradheep, Subramaniam Shankar

Environ Sci Pollut Res Int· December 2024

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The molecular chronology of mammary epithelial cell fate switching.
Queralt Vallmajo-Martin, Zhibo Ma, Sumana Srinivasan, Divya Murali, Christopher Dravis, Shankar Subramaniam

bioRxiv· November 2024

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Publisher Correction: Generation of 'semi-guided' cortical organoids with complex neural oscillations.
Michael Q Fitzgerald, Tiffany Chu, Francesca Puppo, Rebeca Blanch, Miguel Chillón, Shankar Subramaniam

Nat Protoc· October 2024

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Tumor suppressor NME1/NM23-H1 modulates DNA binding of NF-κB RelA.
Shandy Shahabi, Mano Maurya, Shankar Subramaniam, Gourisankar Ghosh

bioRxiv· October 2024

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Tumor suppressor NME1/NM23-H1 modulates DNA binding of NF-κB RelA.
Shandy Shahabi, Mano Maurya, Shankar Subramaniam, Gourisankar Ghosh

Res Sq· October 2024

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Generation of 'semi-guided' cortical organoids with complex neural oscillations.
Michael Q Fitzgerald, Tiffany Chu, Francesca Puppo, Rebeca Blanch, Miguel Chillón, Shankar Subramaniam

Nat Protoc· September 2024

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Study of Respiratory Symptoms and Pulmonary Function among Neem Oil Industry Workers.
Shankar Subramaniam, Abbas Ganesan, Naveenkumar Raju, Nithyaprakash Rajavel, Maheswari Chenniappan

Indian J Occup Environ Med· June 2024

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Single-cell transcriptomics reveals stage- and side-specificity of gene modules in colorectal cancer.
Sara Rahiminejad, Kavitha Mukund, Mano Ram Maurya, Shankar Subramaniam

Res Sq· May 2024

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