Publications by authors named "Shannon Whitmer"

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Discovery of a novel lymphocytic choriomeningitis virus strain associated with severe human disease in immunocompetent patient, New Mexico.
Jordan T Gass, Robert A Nofchissey, Frances M Twohig, Chunyan Ye, Samuel M Goodfellow, Shannon Whitmer

Emerg Microbes Infect· December 2025

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Hyperendemicity of Rift Valley fever in Southwestern Uganda associated with the rapidly evolving lineage C viruses.
Barnabas Bakamutumaho, John Juma, Erin Clancey, Luke Nyakarahuka, Silvia Situma, Shannon L M Whitmer

J Infect Dis· August 2025

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Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Animal dsRNA and ssRNA(-) Viruses Subcommittee, 2025.
Holly R Hughes, Matthew J Ballinger, Yiming Bao, Nicolas Bejerman, Kim R Blasdell, Shannon L M Whitmer

J Gen Virol· July 2025

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Rift Valley Fever Outbreak Investigation Associated with a Dairy Farm Abortion Storm, Mbarara District, Western Uganda, 2023.
Luke Nyakarahuka, Shannon Whitmer, Sophia Mulei, Joanita Mutesi, Jimmy Baluku

Viruses· July 2025

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Development of a culture-independent whole-genome sequencing of Nipah virus using the MinION Oxford Nanopore platform.
Md Mahfuzur Rahman, Mojnu Miah, Mohammad Enayet Hossain, Samiur Rahim, Sharmin Sultana, Shannon L M Whitmer

Microbiol Spectr· June 2025

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Metagenomic Identification of Fusarium solani Strain as Cause of US Fungal Meningitis Outbreak Associated with Surgical Procedures in Mexico, 2023.
Charles Y Chiu, Venice Servellita, Mikael de Lorenzi-Tognon, Patrick Benoit, Nanami Sumimoto, Shannon L Whitmer

Emerg Infect Dis· May 2025

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Use of the Chainchecker application: Uganda's experience during the 2022 Sudan Virus Disease outbreak.
Rebecca Akunzirwe, Shannon Whitmer, Miles Stewart, Julie R Harris, Mercy W Wanyana

PLOS Glob Public Health· April 2025

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Severe Non-Donor-Derived Lymphocytic Choriomeningitis Virus Infection in 2 Solid Organ Transplant Recipients.
Leanna E Sayyad, Kami L Smith, Katrin S Sadigh, Caitlin M Cossaboom, Mary J Choi, Shannon Whitmer

Open Forum Infect Dis· February 2025

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Bayou Hantavirus Cardiopulmonary Syndrome, Louisiana, USA, 2022-2023.
Emma Ortega, Sean Simonson, Elizabeth Shedroff, Shannon Whitmer, Amy Whitesell

Emerg Infect Dis· February 2025

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Atypical hyperendemicity of Rift Valley fever in Southwestern Uganda associated with the rapidly evolving lineage C viruses.
Barnabas Bakamutumaho, John Juma, Erin Clancey, Luke Nyakarahuka, Silvia Situma, Shannon L M Whitmer

medRxiv· January 2025

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Completed genome segments of Maciel, Lechiguanas, and Laguna Negra orthohantaviruses.
Elizabeth Shedroff, Shannon L M Whitmer, Melissa Mobley, Maria Morales-Betoulle, Maria Laura Martin

Microbiol Resour Announc· November 2024

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Fatal meningoencephalitis associated with Ebola virus persistence in two survivors of Ebola virus disease in the Democratic Republic of the Congo: a case report study.
Daniel Mukadi-Bamuleka, François Edidi-Atani, Maria E Morales-Betoulle, Anaïs Legand, Antoine Nkuba-Ndaye, Shannon Whitmer

Lancet Microbe· October 2024

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Crimean-Congo hemorrhagic fever cases diagnosed during an outbreak of Sudan virus disease in Uganda, 2022-23.
Stephen Balinandi, Sophia Mulei, Shannon Whitmer, Luke Nyakarahuka, Caitlin M Cossaboom

PLoS Negl Trop Dis· October 2024

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Human disease prevalence and genotype distribution in the U.S., 2008-2020: a retrospective observational study.
Shannon L M Whitmer, Amy Whitesell, Melissa Mobley, Emir Talundzic, Elizabeth Shedroff

Lancet Reg Health Am· September 2024

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Sudan virus disease super-spreading, Uganda, 2022.
Allan Komakech, Shannon Whitmer, Jonathan Izudi, Charles Kizito, Mackline Ninsiima

BMC Infect Dis· May 2024

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Crimean-Congo Hemorrhagic Fever Virus Diversity and Reassortment, Pakistan, 2017-2020.
Massab Umair, Zaira Rehman, Shannon Whitmer, Melissa Mobley, Ammad Fahim

Emerg Infect Dis· April 2024

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Case of Human Orthohantavirus Infection, Michigan, USA, 2021.
Samuel M Goodfellow, Robert A Nofchissey, Dustin Arsnoe, Chunyan Ye, Seonghyeon Lee, Shannon L M Whitmer

Emerg Infect Dis· April 2024

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Sosuga Virus Detected in Egyptian Rousette Bats () in Sierra Leone.
Brian R Amman, Alusine H Koroma, Amy J Schuh, Immah Conteh, Tara K Sealy, Shannon L M Whitmer

Viruses· April 2024

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2020 Ebola virus disease outbreak in Équateur Province, Democratic Republic of the Congo: a retrospective genomic characterisation.
Eddy Kinganda-Lusamaki, Shannon Whitmer, Emmanuel Lokilo-Lofiko, Adrienne Amuri-Aziza, Francisca Muyembe-Mawete

Lancet Microbe· February 2024

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Novel Oliveros-like Clade C from Rodents in Argentina, 1990-2020.
Elizabeth Shedroff, Maria Laura Martin, Shannon L M Whitmer, Julia Brignone, Jorge B Garcia

Viruses· February 2024

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HantaNet: A New MicrobeTrace Application for Hantavirus Classification, Genomic Surveillance, Epidemiology and Outbreak Investigations.
Roxana Cintron, Shannon L M Whitmer, Evan Moscoso, Ellsworth M Campbell, Reagan Kelly

Viruses· November 2023

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Molecular characterization of the 2022 Sudan virus disease outbreak in Uganda.
Stephen Balinandi, Shannon Whitmer, Sophia Mulei, Charity Nassuna, Godfrey Pimundu

J Virol· October 2023

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Detection of Hantavirus during the COVID-19 Pandemic, Arizona, USA, 2020.
Gavriella Hecht, Ariella P Dale, Irene Ruberto, Guillermo Adame, Ryan Close, Shannon Whitmer

Emerg Infect Dis· August 2023

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Rio Negro Virus Infection, Bolivia, 2021.
Roxana Loayza Mafayle, Maria E Morales-Betoulle, Shannon Whitmer, Caitlin Cossaboom, Jimmy Revollo

Emerg Infect Dis· August 2023

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Detection of Sporadic Outbreaks of Rift Valley Fever in Uganda through the National Viral Hemorrhagic Fever Surveillance System, 2017-2020.
Luke Nyakarahuka, Shannon Whitmer, John Klena, Stephen Balinandi, Emir Talundzic

Am J Trop Med Hyg· May 2023

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