Publications by authors named "Shaofeng Lin"

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Dr. Kinase: predicting the drug-resistance hotspots of protein kinases.
Shaofeng Lin, Chao Tu, Ruifeng Hu, Haiji Wang, Zongcheng Dong

Nucleic Acids Res· July 2025

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Deciphering the MHC immunopeptidome of human cancers with Ligand.MHC atlas.
Zhi Ran, Meilin Mu, Shaofeng Lin, Tao Wang, Jing Zeng

Brief Bioinform· July 2025

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Nanoparticles-based electrochemical sensing platform for high-through immunoassay with redox-activity CaCO nanotags on a magnetic microfluidic device.
Shaofeng Lin, Ting Lin, Haipeng Xu, Haining Li, Wenwen Zhang

Mikrochim Acta· April 2025

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MetaDegron: multimodal feature-integrated protein language model for predicting E3 ligase targeted degrons.
Mengqiu Zheng, Shaofeng Lin, Kunqi Chen, Ruifeng Hu, Liming Wang

Brief Bioinform· September 2024

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m7GRegpred: substrate prediction of N7-methylguanosine (m7G) writers and readers based on sequencing features.
Yu Zheng, Haipeng Li, Shaofeng Lin

Front Genet· August 2024

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Combination of neutrophil-to-lymphocyte ratio and albumin concentration to predict the prognosis of esophageal squamous cell cancer patients undergoing esophagectomy.
Shaofeng Lin, Jingping Lin, Jinsen Weng, Weikun Su, Guibin Weng, Kangni Lin

J Thorac Dis· April 2023

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PIM1 promotes hepatic conversion by suppressing reprogramming-induced ferroptosis and cell cycle arrest.
Yangyang Yuan, Chenwei Wang, Xuran Zhuang, Shaofeng Lin, Miaomiao Luo, Lina Mao

Nat Commun· September 2022

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iPCD: A Comprehensive Data Resource of Regulatory Proteins in Programmed Cell Death.
Dachao Tang, Cheng Han, Shaofeng Lin, Xiaodan Tan, Weizhi Zhang

Cells· June 2022

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Characterization of Tumor Mutation Burden-Based Gene Signature and Molecular Subtypes to Assist Precision Treatment in Gastric Cancer.
Cheng Wei, Minzhe Li, Shaofeng Lin, Jun Xiao

Biomed Res Int· May 2022

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GPS-Uber: a hybrid-learning framework for prediction of general and E3-specific lysine ubiquitination sites.
Chenwei Wang, Xiaodan Tan, Dachao Tang, Yujie Gou, Cheng Han, Shaofeng Lin

Brief Bioinform· March 2022

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Multi-Region Genomic Landscape Analysis for the Preoperative Prediction of Lymph Node Metastasis in Esophageal Carcinoma.
Shaofeng Lin, Yanping Chen, Jianchao Wang, Yibin Cai, Xiaohui Chen

Front Genet· March 2022

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CPLM 4.0: an updated database with rich annotations for protein lysine modifications.
Weizhi Zhang, Xiaodan Tan, Shaofeng Lin, Yujie Gou, Cheng Han

Nucleic Acids Res· January 2022

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Atg9-centered multi-omics integration reveals new autophagy regulators in .
Di Peng, Chen Ruan, Shanshan Fu, Chengwen He, Jingzhen Song, Shaofeng Lin

Autophagy· December 2021

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Combination of albumin concentration and neutrophil-to-lymphocyte ratio for predicting overall survival of patients with non-small cell lung cancer.
Jinsen Weng, Jieping Huang, Wei Yu, Zhiyong Zhao, Biao Zhu, Jingping Lin, Shaofeng Lin

J Thorac Dis· September 2021

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Development and validation of a novel mRNA signature for predicting early relapse in non-small cell lung cancer.
Jingping Lin, Jinsen Weng, Shaofeng Lin, Cuibo Lin, Jieping Huang

Jpn J Clin Oncol· August 2021

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Comparison of a modified one-piece mechanical and double-layer hand-sewn anastomosis in McKeown esophagogastrectomy: A single-institute retrospective study.
Kunshou Zhu, Jiulong Zhang, Xiaohui Chen, Yujie Deng, Shaofeng Lin

Mol Clin Oncol· July 2021

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Posttranscriptional regulation of de novo lipogenesis by glucose-induced O-GlcNAcylation.
Wei Tan, Pei Jiang, Wanjun Zhang, Zhaohua Hu, Shaofeng Lin

Mol Cell· May 2021

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Hypoxia-inducible factor-1α cooperates with histone Lys methylation to predict prognosis in esophageal squamous cell carcinoma.
Xiaohui Shen, Yiping Li, Ying Xu, Min Liu, Qin Zhang, Shaofeng Lin

Biomark Med· May 2021

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Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition).
Daniel J Klionsky, Amal Kamal Abdel-Aziz, Sara Abdelfatah, Mahmoud Abdellatif, Asghar Abdoli, Lina Al-Akra, Sabrina Angelini, Jackeline Soares de Oliveira Beltran, Xiaolin Bi, Laura Elisa Buitrago-Molina, Gabriella Cavallini, Lin Chen, Mark O Collins, April L Darling, George Diallinas, Li-Lin Du, Brooke M Emerling, Eeva-Liisa Eskelinen, Antonella Forlino, Maria F Galindo, Maria Catalina Gomez-Puerto, Angelina S Gross, Jun-Lin Guan, Belinda S Hall, Chunling Huang, Danuta S Kalinowski, Caroline Kumsta, Chao Lin, Chih-Wen Lin, Dar-Shong Lin, Fu-Cheng Lin, Jiandie D Lin, Kurt M Lin, Kwang-Huei Lin, Liang-Tzung Lin, Pei-Hui Lin, Qiong Lin, Shaofeng Lin, Su-Ju Lin, Wenyu Lin, Xueying Lin, Yao-Xin Lin, Yee-Shin Lin, Rafael Linden, Paula Lindner, Shuo-Chien Ling, Paul Lingor, Amelia K Linnemann, Honglin Luo, Alina Maloyan, Celine Masclaux-Daubresse, Caroline Mauvezin, BethAnn McLaughlin, Fionn McLoughlin, Maurizio Molinari, Faustino Mollinedo, Andrea Felinto Moura, Karolina Pierzynowska, Karolina Pircs, Thomas Pulinilkunnil, Jan H Reiling, Clint A Stalnecker, Ling-Yan Su, Katalin Susztak, Davide Tampellini, Daolin Tang, Ling Tian, Helin Vakifahmetoglu-Norberg, J Lindsay Whitton, Zhonglin Xie, Ling Yang, Ling-Qing Yuan, Shilin Yuan, Scott O Zeitlin, Hanlin Zhang, Hui-Ling Zhang, Kalin Y B Zhang, Lin Zhang, Ling Zheng, Binglin Zhu, Yong Lin, Christina L Stallings

Autophagy· January 2021

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PTMsnp: A Web Server for the Identification of Driver Mutations That Affect Protein Post-translational Modification.
Di Peng, Huiqin Li, Bosu Hu, Hongwan Zhang, Li Chen, Shaofeng Lin

Front Cell Dev Biol· November 2020

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Impact of treatment modality on long-term survival of stage IA small-cell lung cancer patients: a cohort study of the U.S. SEER database.
Shao-Feng Lin, Yu-Zhen Zheng, Xiao-Qiang Li, Hai-Peng Xu, Jun-Jie Wang

Ann Transl Med· October 2020

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Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers.
Zhengbo Song, Xiangbin Chen, Yi Shi, Rongfang Huang, Wenxian Wang, Shaofeng Lin

Mol Ther Methods Clin Dev· September 2020

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LINC00673 Represses CDKN2C and Promotes the Proliferation of Esophageal Squamous Cell Carcinoma Cells by EZH2-Mediated H3K27 Trimethylation.
Menghan Zhou, Yuhang Mao, Shenling Yu, Yiping Li, Rong Yin, Shaofeng Lin

Front Oncol· August 2020

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Integrated omics in Drosophila uncover a circadian kinome.
Chenwei Wang, Ke Shui, Shanshan Ma, Shaofeng Lin, Ying Zhang

Nat Commun· June 2020

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dbPSP 2.0, an updated database of protein phosphorylation sites in prokaryotes.
Ying Shi, Ying Zhang, Shaofeng Lin, Chenwei Wang, Jiaqi Zhou

Sci Data· May 2020

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