Publications by authors named "Shaun D Jackman"

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The western redcedar genome reveals low genetic diversity in a self-compatible conifer.
Tal J Shalev, Omnia Gamal El-Dien, Macaire M S Yuen, Shu Shengqiang, Shaun D Jackman

Genome Res· October 2022

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Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure.
Shaun D Jackman, Lauren Coombe, René L Warren, Heather Kirk, Eva Trinh

Genome Biol Evol· July 2020

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ORCA: a comprehensive bioinformatics container environment for education and research.
Shaun D Jackman, Tatyana Mozgacheva, Susie Chen, Brendan O'Huiginn, Lance Bailey

Bioinformatics· November 2019

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Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada.
Diana Lin, Lauren Coombe, Shaun D Jackman, Kristina K Gagalova, René L Warren

Microbiol Resour Announc· June 2019

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Complete Chloroplast Genome Sequence of an Engelmann Spruce (, Genotype Se404-851) from Western Canada.
Diana Lin, Lauren Coombe, Shaun D Jackman, Kristina K Gagalova, René L Warren

Microbiol Resour Announc· June 2019

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The Genome of the Steller Sea Lion ().
Harwood H Kwan, Luka Culibrk, Gregory A Taylor, Sreeja Leelakumari, Ryan Tan, Shaun D Jackman

Genes (Basel)· June 2019

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The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis.
Gregory A Taylor, Heather Kirk, Lauren Coombe, Shaun D Jackman, Justin Chu

Genes (Basel)· November 2018

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Tigmint: correcting assembly errors using linked reads from large molecules.
Shaun D Jackman, Lauren Coombe, Justin Chu, Rene L Warren, Benjamin P Vandervalk

BMC Bioinformatics· October 2018

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ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
Lauren Coombe, Jessica Zhang, Benjamin P Vandervalk, Justin Chu, Shaun D Jackman

BMC Bioinformatics· June 2018

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Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.
Lauren Coombe, René L Warren, Shaun D Jackman, Chen Yang, Benjamin P Vandervalk

PLoS One· August 2017

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ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.
Shaun D Jackman, Benjamin P Vandervalk, Hamid Mohamadi, Justin Chu, Sarah Yeo

Genome Res· May 2017

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Konnector v2.0: pseudo-long reads from paired-end sequencing data.
Benjamin P Vandervalk, Chen Yang, Zhuyi Xue, Karthika Raghavan, Justin Chu, Shaun D Jackman

BMC Med Genomics· July 2016

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Kleat: cleavage site analysis of transcriptomes.
Inanç Birol, Anthony Raymond, Readman Chiu, Ka Ming Nip, Shaun D Jackman

Pac Symp Biocomput· April 2016

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DIDA: Distributed Indexing Dispatched Alignment.
Hamid Mohamadi, Benjamin P Vandervalk, Anthony Raymond, Shaun D Jackman, Justin Chu

PLoS One· April 2016

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UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation.
Shaun D Jackman, Joerg Bohlmann, İnanç Birol

PLoS One· April 2016

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Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.
Shaun D Jackman, René L Warren, Ewan A Gibb, Benjamin P Vandervalk, Hamid Mohamadi

Genome Biol Evol· December 2015

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Spaced Seed Data Structures for De Novo Assembly.
Inanç Birol, Justin Chu, Hamid Mohamadi, Shaun D Jackman, Karthika Raghavan

Int J Genomics· November 2015

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Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism.
René L Warren, Christopher I Keeling, Macaire Man Saint Yuen, Anthony Raymond, Greg A Taylor, Shaun D Jackman

Plant J· July 2015

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Sealer: a scalable gap-closing application for finishing draft genomes.
Daniel Paulino, René L Warren, Benjamin P Vandervalk, Anthony Raymond, Shaun D Jackman

BMC Bioinformatics· July 2015

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BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.
Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D Jackman, Ka Ming Nip

Bioinformatics· December 2014

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Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.
Lucas Swanson, Gordon Robertson, Karen L Mungall, Yaron S Butterfield, Readman Chiu, Shaun D Jackman

BMC Genomics· August 2013

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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.
Keith R Bradnam, Joseph N Fass, Anton Alexandrov, Paul Baranay, Michael Bechner, Shaun D Jackman

Gigascience· July 2013

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Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.
Inanc Birol, Anthony Raymond, Shaun D Jackman, Stephen Pleasance, Robin Coope

Bioinformatics· June 2013

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The genetic landscape of high-risk neuroblastoma.
Trevor J Pugh, Olena Morozova, Edward F Attiyeh, Shahab Asgharzadeh, Jun S Wei, Shaun D Jackman

Nat Genet· March 2013

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Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest.
Christopher I Keeling, Macaire M S Yuen, Nancy Y Liao, T Roderick Docking, Simon K Chan, Shaun D Jackman

Genome Biol· March 2013

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