Publications by authors named "Shawn Sweeney"

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Biomarker Inference and the Timing of Next-Generation Sequencing in a Multi-Institutional, Cross-Cancer Clinicogenomic Data Set.
Kenneth L Kehl, Jessica A Lavery, Samantha Brown, Hannah Fuchs, Gregory Riely, Shawn M Sweeney

JCO Precis Oncol· March 2024

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Genomic Characterization and Clinical Outcomes of Patients with Peritoneal Metastases from the AACR GENIE Biopharma Collaborative Colorectal Cancer Registry.
Enrique Sanz-Garcia, Samantha Brown, Jessica A Lavery, Jessica Weiss, Hannah E Fuchs, Shawn M Sweeney

Cancer Res Commun· February 2024

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Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal.
Ino de Bruijn, Ritika Kundra, Brooke Mastrogiacomo, Thinh Ngoc Tran, Luke Sikina, Shawn M Sweeney

Cancer Res· December 2023

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The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non-Small Cell Lung Cancer.
Noura J Choudhury, Jessica A Lavery, Samantha Brown, Ino de Bruijn, Justin Jee, Shawn M Sweeney

Clin Cancer Res· September 2023

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Addressing racial and ethnic disparities in AACR project GENIE.
Shawn M Sweeney, Jessica A Lavery, Hannah E Fuchs, Jocelyn A Lee, Samantha Brown

NPJ Precis Oncol· August 2023

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Challenges to Using Big Data in Cancer.
Shawn M Sweeney, Hisham K Hamadeh, Natalie Abrams, Stacey J Adam, Sara Brenner

Cancer Res· April 2023

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Case Studies for Overcoming Challenges in Using Big Data in Cancer.
Shawn M Sweeney, Hisham K Hamadeh, Natalie Abrams, Stacey J Adam, Sara Brenner

Cancer Res· April 2023

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AACR Project GENIE: 100,000 Cases and Beyond.
Trevor J Pugh, Jonathan L Bell, Jeff P Bruce, Gary J Doherty, Matthew Galvin, Shawn M Sweeney

Cancer Discov· September 2022

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Implications of Selection Bias Due to Delayed Study Entry in Clinical Genomic Studies.
Samantha Brown, Jessica A Lavery, Ronglai Shen, Axel S Martin, Kenneth L Kehl, Shawn M Sweeney

JAMA Oncol· February 2022

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A Scalable Quality Assurance Process for Curating Oncology Electronic Health Records: The Project GENIE Biopharma Collaborative Approach.
Jessica A Lavery, Eva M Lepisto, Samantha Brown, Hira Rizvi, Caroline McCarthy, Shawn Sweeney

JCO Clin Cancer Inform· February 2022

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Correlation Between Surrogate End Points and Overall Survival in a Multi-institutional Clinicogenomic Cohort of Patients With Non-Small Cell Lung or Colorectal Cancer.
Kenneth L Kehl, Gregory J Riely, Eva M Lepisto, Jessica A Lavery, Jeremy L Warner, Shawn M Sweeney

JAMA Netw Open· July 2021

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Characteristics and Outcome of -Mutant Breast Cancer Defined through AACR Project GENIE, a Clinicogenomic Registry.
Lillian M Smyth, Qin Zhou, Bastien Nguyen, Celeste Yu, Eva M Lepisto, Shawn M Sweeney

Cancer Discov· April 2020

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American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange: From Inception to First Data Release and Beyond-Lessons Learned and Member Institutions' Perspectives.
Christine M Micheel, Shawn M Sweeney, Michele L LeNoue-Newton, Fabrice André, Philippe L Bedard

JCO Clin Cancer Inform· December 2018

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Regulation of cardiovascular development and integrity by the heart of glass-cerebral cavernous malformation protein pathway.
Benjamin Kleaveland, Xiangjian Zheng, Jian J Liu, Yannick Blum, Jennifer J Tung, Shawn M Sweeney

Nat Med· February 2009

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Candidate cell and matrix interaction domains on the collagen fibril, the predominant protein of vertebrates.
Shawn M Sweeney, Joseph P Orgel, Andrzej Fertala, Jon D McAuliffe, Kevin R Turner

J Biol Chem· July 2008

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Syk and Slp-76 mutant mice reveal a cell-autonomous hematopoietic cell contribution to vascular development.
Eric Sebzda, Chris Hibbard, Shawn Sweeney, Farhad Abtahian, Natalie Bezman

Dev Cell· September 2006

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Angiogenesis in collagen I requires alpha2beta1 ligation of a GFP*GER sequence and possibly p38 MAPK activation and focal adhesion disassembly.
Shawn M Sweeney, Gloria DiLullo, Simon J Slater, José Martinez, Renato V Iozzo

J Biol Chem· August 2003

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Endorepellin, a novel inhibitor of angiogenesis derived from the C terminus of perlecan.
Maurizio Mongiat, Shawn M Sweeney, James D San Antonio, Jian Fu, Renato V Iozzo

J Biol Chem· February 2003

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Mapping the ligand-binding sites and disease-associated mutations on the most abundant protein in the human, type I collagen.
Gloria A Di Lullo, Shawn M Sweeney, Jarmo Korkko, Leena Ala-Kokko, James D San Antonio

J Biol Chem· February 2002

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