Publications by authors named "Shihao Shen"

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Bayesian mediation analysis using patient-reported outcomes from AI chatbots to infer causal pathways in clinical trials.
Shihao Shen, Jun Yin

PLoS One· July 2025

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Long-term efficacy and safety of mitapivat in non-transfusion-dependent α- or β-thalassaemia: An open-label phase 2 study.
Kevin H M Kuo, D Mark Layton, Ashutosh Lal, Elliott P Vichinsky, Jayme L Dahlin, Shihao Shen

Br J Haematol· June 2025

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Challenges, opportunities, and innovative statistical designs for precision oncology trials.
Jun Yin, Shihao Shen, Qian Shi

Ann Transl Med· September 2022

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New insights into FeS/persulfate system for tetracycline elimination: Iron valence, homogeneous-heterogeneous reactions and degradation pathways.
Jinhong Fan, Ying Cai, Shihao Shen, Lin Gu

J Environ Sci (China)· February 2022

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Enhanced degradation of tetracycline by Cu(II) complexation in the FeS/sulfite system.
Ying Cai, Shihao Shen, Jinhong Fan

J Hazard Mater· January 2022

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phase1RMD: An R package for repeated measures dose-finding designs with novel toxicity and efficacy endpoints.
Jun Yin, Yu Du, Rui Qin, Shihao Shen, Sumithra Mandrekar

PLoS One· November 2021

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Determination of Methomyl Residue in Tobacco Samples by Heart-Cutting Two-Dimensional Liquid Chromatography with Tandem Mass Spectrometry.
Shihao Shen, Min Chen, Tiannan Wang, Ting Fei, Dianhai Yang

Int J Anal Chem· October 2020

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Residue measurement of pendimethalin in tobacco by using heart-cutting two dimensional liquid chromatography coupled with tandem mass spectrometry.
Shihao Shen, Min Chen, Xianying Wang, Ting Fei, Dianhai Yang

J Sep Sci· September 2020

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rMATS-DVR: rMATS discovery of differential variants in RNA.
Jinkai Wang, Yang Pan, Shihao Shen, Lan Lin, Yi Xing

Bioinformatics· July 2017

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Population and allelic variation of A-to-I RNA editing in human transcriptomes.
Eddie Park, Jiguang Guo, Shihao Shen, Levon Demirdjian, Ying Nian Wu

Genome Biol· July 2017

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Challenges and Innovations in Phase I Dose-Finding Designs for Molecularly Targeted Agents and Cancer Immunotherapies.
Jun Yin, Shihao Shen

J Biom Biostat· December 2016

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Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease.
Lan Lin, Juw Won Park, Shyam Ramachandran, Yida Zhang, Yu-Ting Tseng, Shihao Shen

Hum Mol Genet· August 2016

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SURVIV for survival analysis of mRNA isoform variation.
Shihao Shen, Yuanyuan Wang, Chengyang Wang, Ying Nian Wu, Yi Xing

Nat Commun· June 2016

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Low-Intensity Pulsed Ultrasound Treatment at an Early Osteoarthritis Stage Protects Rabbit Cartilage From Damage via the Integrin/Focal Adhesion Kinase/Mitogen-Activated Protein Kinase Signaling Pathway.
Peng Xia, Shihao Shen, Qiang Lin, Kai Cheng, Shasha Ren

J Ultrasound Med· November 2015

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Low-Intensity Pulsed Ultrasound Affects Chondrocyte Extracellular Matrix Production via an Integrin-Mediated p38 MAPK Signaling Pathway.
Peng Xia, Shasha Ren, Qiang Lin, Kai Cheng, Shihao Shen

Ultrasound Med Biol· June 2015

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Transcriptome-wide landscape of pre-mRNA alternative splicing associated with metastatic colonization.
Zhi-xiang Lu, Qin Huang, Juw Won Park, Shihao Shen, Lan Lin

Mol Cancer Res· February 2015

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rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data.
Shihao Shen, Juw Won Park, Zhi-xiang Lu, Lan Lin, Michael D Henry

Proc Natl Acad Sci U S A· December 2014

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Similarity of markers identified from cancer gene expression studies: observations from GEO.
Xingjie Shi, Shihao Shen, Jin Liu, Jian Huang, Yong Zhou

Brief Bioinform· September 2014

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Effects of low-intensity pulsed ultrasound on integrin-FAK-PI3K/Akt mechanochemical transduction in rabbit osteoarthritis chondrocytes.
Kai Cheng, Peng Xia, Qiang Lin, Shihao Shen, Mingxia Gao

Ultrasound Med Biol· July 2014

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The RNA binding protein RBM38 (RNPC1) regulates splicing during late erythroid differentiation.
Laurie A Heinicke, Behnam Nabet, Shihao Shen, Peng Jiang, Sebastiaan van Zalen

PLoS One· June 2014

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Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS.
Juw Won Park, Collin Tokheim, Shihao Shen, Yi Xing

Methods Mol Biol· February 2014

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AAPL: Assessing Association between P-value Lists.
Tianwei Yu, Yize Zhao, Shihao Shen

Stat Anal Data Min· April 2013

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MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data.
Shihao Shen, Juw Won Park, Jian Huang, Kimberly A Dittmar, Zhi-xiang Lu

Nucleic Acids Res· April 2012

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Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing.
Kimberly A Dittmar, Peng Jiang, Juw Won Park, Karine Amirikian, Ji Wan, Shihao Shen

Mol Cell Biol· April 2012

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Widespread establishment and regulatory impact of Alu exons in human genes.
Shihao Shen, Lan Lin, James J Cai, Peng Jiang, Elizabeth J Kenkel

Proc Natl Acad Sci U S A· February 2011

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