Publications by authors named "Shinichi Machida"

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Ion solvation under gigapascal pressure.
Zhuanfang Jing, Toshio Yamaguchi, Shinichi Machida, Takanori Hattori, Yongquan Zhou

J Chem Phys· November 2025

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Structural basis of the hepatitis B virus X protein in complex with DDB1.
Hiroki Tanaka, Joao Diogo Dias, Basile Jay, Shunsuke Kita, Mina Sasaki, Shinichi Machida

Proc Natl Acad Sci U S A· June 2025

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Unintegrated HIV-1 DNA recruits cGAS via its histone-binding domain to escape innate immunity.
Cyprien Jahan, Lucie Bonnet-Madin, Shinichi Machida, Bijan Sobhian, Suzie Thenin-Houssier

Proc Natl Acad Sci U S A· March 2025

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Crystal structure and compressibility of magnesium chloride heptahydrate found under high pressure.
Keishiro Yamashita, Kazuki Komatsu, Takanori Hattori, Shinichi Machida, Hiroyuki Kagi

Acta Crystallogr B Struct Sci Cryst Eng Mater· December 2024

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A Novel AGR2 Variant Causing Aberrant Monomer-Dimer Equilibrium Leading to Severe Respiratory and Digestive Symptoms.
Sanami Takada, Silvanna Gallo, Sebastian Silva, Hiroki Tanaka, Oscar Pincheira, Shinichi Machida

J Clin Immunol· December 2024

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Hydrogen bond symmetrisation in DO ice observed by neutron diffraction.
Kazuki Komatsu, Takanori Hattori, Stefan Klotz, Shinichi Machida, Keishiro Yamashita

Nat Commun· June 2024

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POLE3 is a repressor of unintegrated HIV-1 DNA required for efficient virus integration and escape from innate immune sensing.
Suzie Thenin-Houssier, Shinichi Machida, Cyprien Jahan, Lucie Bonnet-Madin, Scarlette Abbou

Sci Adv· November 2023

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Slightly Hydrogen-Ordered State of Ice IV Evidenced by Neutron Diffraction.
Hiroki Kobayashi, Kazuki Komatsu, Hayate Ito, Shinichi Machida, Takanori Hattori

J Phys Chem Lett· November 2023

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GRL-142 binds to and impairs HIV-1 integrase nuclear localization signal and potently suppresses highly INSTI-resistant HIV-1 variants.
Manabu Aoki, Hiromi Aoki-Ogata, Haydar Bulut, Hironori Hayashi, Nobutoki Takamune, Shinichi Machida

Sci Adv· July 2023

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Combined direct/indirect detection allows identification of DNA termini in diverse sequencing datasets and supports a multiple-initiation-site model for HIV plus-strand synthesis.
William Wang, Karen L Artiles, Shinichi Machida, Monsef Benkirane, Nimit Jain

bioRxiv· June 2023

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Faithful to the Marseille tradition: Unique and intriguing-that's how Marseillevirus packs its DNA.
Shinichi Machida, Joao Diogo Dias, Monsef Benkirane

Mol Cell· December 2022

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Atomic distribution and local structure in-situ VII from in situ neutron diffraction.
Keishiro Yamashita, Kazuki Komatsu, Stefan Klotz, Oscar Fabelo, Maria T Fernández-Díaz, Shinichi Machida

Proc Natl Acad Sci U S A· October 2022

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Observation of Dihydrogen Bonds in High-Pressure Phases of Ammonia Borane by X-ray and Neutron Diffraction Measurements.
Satoshi Nakano, Asami Sano-Furukawa, Takanori Hattori, Shinichi Machida, Kazuki Komatsu

Inorg Chem· March 2021

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Author Correction: Experimental evidence for the existence of a second partially-ordered phase of ice VI.
Ryo Yamane, Kazuki Komatsu, Jun Gouchi, Yoshiya Uwatoko, Shinichi Machida

Nat Commun· March 2021

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Experimental evidence for the existence of a second partially-ordered phase of ice VI.
Ryo Yamane, Kazuki Komatsu, Jun Gouchi, Yoshiya Uwatoko, Shinichi Machida

Nat Commun· February 2021

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Structure refinement of black phosphorus under high pressure.
Yuichi Akahama, Masashi Miyakawa, Takashi Taniguchi, Asami Sano-Furukawa, Shinichi Machida

J Chem Phys· July 2020

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Exploring histone loading on HIV DNA reveals a dynamic nucleosome positioning between unintegrated and integrated viral genome.
Shinichi Machida, David Depierre, Heng-Chang Chen, Suzie Thenin-Houssier, Gaël Petitjean

Proc Natl Acad Sci U S A· March 2020

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Anomalous hydrogen dynamics of the ice VII-VIII transition revealed by high-pressure neutron diffraction.
Kazuki Komatsu, Stefan Klotz, Shinichi Machida, Asami Sano-Furukawa, Takanori Hattori

Proc Natl Acad Sci U S A· March 2020

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Ice I without stacking disorder by evacuating hydrogen from hydrogen hydrate.
Kazuki Komatsu, Shinichi Machida, Fumiya Noritake, Takanori Hattori, Asami Sano-Furukawa

Nat Commun· February 2020

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Crystal structure of a high-pressure phase of magnesium chloride hexahydrate determined by in-situ X-ray and neutron diffraction methods.
Keishiro Yamashita, Kazuki Komatsu, Takanori Hattori, Shinichi Machida, Hiroyuki Kagi

Acta Crystallogr C Struct Chem· December 2019

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H3K14 ubiquitylation promotes H3K9 methylation for heterochromatin assembly.
Eriko Oya, Reiko Nakagawa, Yuriko Yoshimura, Mayo Tanaka, Gohei Nishibuchi, Shinichi Machida

EMBO Rep· October 2019

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Intrabody-based FRET probe to visualize endogenous histone acetylation.
Chan-I Chung, Yuko Sato, Yuki Ohmuro-Matsuyama, Shinichi Machida, Hitoshi Kurumizaka

Sci Rep· July 2019

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Mitotic phosphorylation of HP1α regulates its cell cycle-dependent chromatin binding.
Gohei Nishibuchi, Shinichi Machida, Reiko Nakagawa, Yuriko Yoshimura, Kyoko Hiragami-Hamada

J Biochem· May 2019

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Author Correction: CHD3 helicase domain mutations cause a neurodevelopmental syndrome with macrocephaly and impaired speech and language.
Lot Snijders Blok, Justine Rousseau, Joanna Twist, Sophie Ehresmann, Motoki Takaku, Shinichi Machida

Nat Commun· May 2019

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Author Correction: CHD3 helicase domain mutations cause a neurodevelopmental syndrome with macrocephaly and impaired speech and language.
Lot Snijders Blok, Justine Rousseau, Joanna Twist, Sophie Ehresmann, Motoki Takaku, Shinichi Machida

Nat Commun· February 2019

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