Publications by authors named "Shinji Iida"

Claim this Profile
X
Xenon Explores Apparent and Cryptic Binding Sites.
Shinji Iida

J Chem Inf Model· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Data-efficient protein mutational effect prediction with weak supervision by molecular simulation and protein language models.
Teppei Deguchi, Nur Syatila Ab Ghani, Yoichi Kurumida, Shinji Iida, Kaito Kobayashi

Brief Bioinform· August 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Dissociation Rate Calculation via Constant-Force Steered Molecular Dynamics Simulation.
Shinji Iida, Tomoshi Kameda

J Chem Inf Model· June 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
F
Free energy and kinetic rate calculation via non-equilibrium molecular simulation: application to biomolecules.
Shinji Iida, Kameda Tomoshi

Biophys Rev· December 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
F
Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule.
Junichi Higo, Kota Kasahara, Gert-Jan Bekker, Benson Ma, Shun Sakuraba, Shinji Iida

Sci Rep· August 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Asymmetric dynamics of dimeric SARS-CoV-2 and SARS-CoV main proteases in an apo form: Molecular dynamics study on fluctuations of active site, catalytic dyad, and hydration water.
Shinji Iida, Yoshifumi Fukunishi

BBA Adv· June 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Continuum mechanical parameterisation of cytoplasmic dynein from atomistic simulation.
Benjamin S Hanson, Shinji Iida, Daniel J Read, Oliver G Harlen, Genji Kurisu

Methods· January 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Structural Fluctuations of Aromatic Residues in an Apo-Form Reveal Cryptic Binding Sites: Implications for Fragment-Based Drug Design.
Shinji Iida, Hironori K Nakamura, Tadaaki Mashimo, Yoshifumi Fukunishi

J Phys Chem B· November 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Multimodal Structural Distribution of the p53 C-Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder.
Shinji Iida, Takeshi Kawabata, Kota Kasahara, Haruki Nakamura, Junichi Higo

J Chem Theory Comput· April 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
V
Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational sampling.
Shinji Iida, Tadaaki Mashimo, Takashi Kurosawa, Hironobu Hojo, Hiroya Muta

J Comput Chem· December 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Enhanced conformational sampling to visualize a free-energy landscape of protein complex formation.
Shinji Iida, Haruki Nakamura, Junichi Higo

Biochem J· June 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis