Publications by authors named "Shintaro Minami"

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Exploration of novel αβ-protein folds through de novo design.
Shintaro Minami, Naohiro Kobayashi, Toshihiko Sugiki, Toshio Nagashima, Toshimichi Fujiwara

Nat Struct Mol Biol· August 2023

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Prediction of chaperonin GroE substrates using small structural patterns of proteins.
Shintaro Minami, Tatsuya Niwa, Eri Uemura, Ryotaro Koike, Hideki Taguchi

FEBS Open Bio· April 2023

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Enumeration and comprehensive in-silico modeling of three-helix bundle structures composed of typical αα-hairpins.
Koya Sakuma, Shintaro Minami

BMC Bioinformatics· September 2021

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A prospective compound screening contest identified broader inhibitors for Sirtuin 1.
Shuntaro Chiba, Masahito Ohue, Anastasiia Gryniukova, Petro Borysko, Sergey Zozulya, Shintaro Minami

Sci Rep· December 2019

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Characteristics of interactions at protein segments without non-local intramolecular contacts in the Protein Data Bank.
Kota Kasahara, Shintaro Minami, Yasunori Aizawa

PLoS One· April 2019

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MICAN-SQ: a sequential protein structure alignment program that is applicable to monomers and all types of oligomers.
Shintaro Minami, Kengo Sawada, Motonori Ota, George Chikenji

Bioinformatics· October 2018

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Large-scale aggregation analysis of eukaryotic proteins reveals an involvement of intrinsically disordered regions in protein folding.
Eri Uemura, Tatsuya Niwa, Shintaro Minami, Kazuhiro Takemoto, Satoshi Fukuchi

Sci Rep· January 2018

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Rules for connectivity of secondary structure elements in protein: Two-layer αβ sandwiches.
Shintaro Minami, George Chikenji, Motonori Ota

Protein Sci· November 2017

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An iterative compound screening contest method for identifying target protein inhibitors using the tyrosine-protein kinase Yes.
Shuntaro Chiba, Takashi Ishida, Kazuyoshi Ikeda, Masahiro Mochizuki, Reiji Teramoto, Shintaro Minami

Sci Rep· September 2017

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Importance of consensus region of multiple-ligand templates in a virtual screening method.
Tatsuya Okuno, Koya Kato, Shintaro Minami, Tomoki P Terada, Masaki Sasai

Biophys Physicobiol· July 2016

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How a spatial arrangement of secondary structure elements is dispersed in the universe of protein folds.
Shintaro Minami, Kengo Sawada, George Chikenji

PLoS One· December 2015

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Synthesis of multiply substituted 1,6-dihydropyridines through Cu(I)-catalyzed 6-endo cyclization.
Haruki Mizoguchi, Ryo Watanabe, Shintaro Minami, Hideaki Oikawa, Hiroki Oguri

Org Biomol Chem· June 2015

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MICAN: a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C(α) only models, Alternative alignments, and Non-sequential alignments.
Shintaro Minami, Kengo Sawada, George Chikenji

BMC Bioinformatics· January 2013

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Depletion of selenoprotein GPx4 in spermatocytes causes male infertility in mice.
Hirotaka Imai, Nao Hakkaku, Ryo Iwamoto, Jyunko Suzuki, Toshiyuki Suzuki, Shintaro Minami

J Biol Chem· November 2009

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