Publications by authors named "Shipeng Shang"

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ZNF385A was identified as a novel colorectal cancer-related functional gene by analysis of the interaction and immune characteristics of oxidative stress and the inflammatory response.
Yaqi Guo, Shipeng Shang, Leilei Liang, Enrui Liu

Discov Oncol· March 2025

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The optimal time interval between neoadjuvant chemoradiotherapy and surgery for patients with an unfavorable pathological response in locally advanced rectal cancer: a retrospective cohort study.
Litao Wang, Jianyong Fan, Yaqi Guo, Shipeng Shang, Han Gao

Front Oncol· February 2025

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Single-cell RNA-sequencing reveals a unique landscape of the tumor microenvironment in obesity-associated breast cancer.
Guanghui Zhao, Xiaodong Zhang, Liying Meng, Ke Dong, Shipeng Shang

Oncogene· November 2024

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The global landscape of immune-derived lncRNA signature in colorectal cancer.
Mengying Zhang, Yifei Wu, Jingyi Mou, Yang Yao, Pengbo Wen, Shipeng Shang

Heliyon· February 2024

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EdeepSADPr: an extensive deep-learning architecture for prediction of the crosstalks of serine phosphorylation and ADP-ribosylation.
Haoqiang Jiang, Shipeng Shang, Yutong Sha, Lin Zhang, Ningning He

Front Cell Dev Biol· April 2023

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Lactate regulators contribute to tumor microenvironment and predict prognosis in lung adenocarcinoma.
Shipeng Shang, Mi-Zhou Wang, Zhiyuan Xing, Ningning He, Shangyong Li

Front Immunol· December 2022

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AgingBank: a manually curated knowledgebase and high-throughput analysis platform that provides experimentally supported multi-omics data relevant to aging in multiple species.
Yue Gao, Shipeng Shang, Shuang Guo, Xinyue Wang, Hanxiao Zhou, Shangwei Ning

Brief Bioinform· November 2022

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CysModDB: a comprehensive platform with the integration of manually curated resources and analysis tools for cysteine posttranslational modifications.
Yanzheng Meng, Lin Zhang, Laizhi Zhang, Ziyu Wang, Xuanwen Wang, Shipeng Shang

Brief Bioinform· November 2022

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Identification and exploration of pharmacological pyroptosis-related biomarkers of ulcerative colitis.
Kaiwei Chen, Shipeng Shang, Shengnan Yu, Luwen Cui, Shangyong Li

Front Immunol· November 2022

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Comprehensive characterization genetic regulation and chromatin landscape of enhancer-associated long non-coding RNAs and their implication in human cancer.
Xin Li, Xu Pan, Hanxiao Zhou, Peng Wang, Yue Gao, Shipeng Shang, Shangwei Ning

Brief Bioinform· January 2022

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Epigenome signature as an immunophenotype indicator prompts durable clinical immunotherapy benefits in lung adenocarcinoma.
Xu Pan, Caiyu Zhang, Junwei Wang, Peng Wang, Yue Gao, Shipeng Shang, Shangwei Ning

Brief Bioinform· January 2022

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Identifying and characterizing lincRNA genomic clusters reveals its cooperative functions in human cancer.
Hanxiao Zhou, Yue Gao, Xin Li, Shipeng Shang, Peng Wang, Shangwei Ning

J Transl Med· December 2021

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DNA methylation dynamics of long noncoding RNA during human fetal development.
Xin Li, Yuanyuan Fu, Yue Gao, Shipeng Shang, Shuang Guo, Shangwei Ning

Epigenomics· September 2021

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MeImmS: Predict Clinical Benefit of Anti-PD-1/PD-L1 Treatments Based on DNA Methylation in Non-small Cell Lung Cancer.
Shipeng Shang, Xin Li, Yue Gao, Shuang Guo, Dailin Sun, Shangwei Ning

Front Genet· May 2021

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LincSNP 3.0: an updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements.
Yue Gao, Xin Li, Shipeng Shang, Shuang Guo, Peng Wang, Shangwei Ning

Nucleic Acids Res· January 2021

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Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data.
Yue Gao, Shipeng Shang, Shuang Guo, Xin Li, Hanxiao Zhou, Shangwei Ning

Nucleic Acids Res· January 2021

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LnCeCell: a comprehensive database of predicted lncRNA-associated ceRNA networks at single-cell resolution.
Peng Wang, Qiuyan Guo, Yangyang Hao, Qian Liu, Yue Gao, Shipeng Shang, Shangwei Ning

Nucleic Acids Res· January 2021

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LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation.
Peng Wang, Xin Li, Yue Gao, Qiuyan Guo, Shangwei Ning, Shipeng Shang

Nucleic Acids Res· January 2020

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Comprehensive Characterization of Somatic Mutations Impacting lncRNA Expression for Pan-Cancer.
Yue Gao, Xin Li, Hui Zhi, Yunpeng Zhang, Peng Wang, Shipeng Shang, Shangwei Ning

Mol Ther Nucleic Acids· December 2019

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The MS-lincRNA landscape reveals a novel lincRNA BCLIN25 that contributes to tumorigenesis by upregulating ERBB2 expression via epigenetic modification and RNA-RNA interactions in breast cancer.
Shouping Xu, Hongbo Liu, Lin Wan, Weijia Zhang, Qin Wang, Shipeng Shang

Cell Death Dis· December 2019

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CancerClock: A DNA Methylation Age Predictor to Identify and Characterize Aging Clock in Pan-Cancer.
Tongtong Zhu, Yue Gao, Junwei Wang, Xin Li, Shipeng Shang, Shangwei Ning

Front Bioeng Biotechnol· December 2019

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Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers.
Yue Gao, Peng Wang, Yanxia Wang, Xueyan Ma, Hui Zhi, Shipeng Shang, Shangwei Ning

Nucleic Acids Res· January 2019

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Integrated analysis of the prognostic role of the lymph node ratio in node-positive gastric cancer: A meta-analysis.
Jiang Zhu, Zhao Xue, Shumei Zhang, Xinxin Guo, Laihui Zhai, Shipeng Shang

Int J Surg· September 2018

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Exploration of drug-response mechanism by integrating genetics and epigenetics across cancers.
Wenhua Lv, Mengying Zhang, Jiang Zhu, Min Zhang, Ce Ci, Shipeng Shang

Epigenomics· July 2018

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DNA methylation dynamics: identification and functional annotation.
Hongbo Liu, Song Li, Xinyu Wang, Jiang Zhu, Yanjun Wei, Shipeng Shang

Brief Funct Genomics· November 2016

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