Publications by authors named "ShuaiCheng Li"

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Immunological dynamics in orthotopic compared with subcutaneous murine models of HPV-positive oropharyngeal cancer.
Minzi Mao, Ke Qiu, Lan Feng, Yao Song, Yufang Rao, Shuo Li, Xiuli Shao, Geoffrey Liu, Shuaicheng Li

Dis Model Mech· December 2025

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Targeting TET3 suppresses group 3 medulloblastoma stemness and progression via impairing hypomethylation of Otx2 super-enhancer.
Xuan Chen, Ziwei Wang, Yan Song, Yu Su, Yahui Zhao, Jiankang Li, Olivier Saulnier, Fei Liu, Zijia Liu, Meiyu Li, Liam D Hendrikse, Yanong Li, Youliang Sun, Xueling Qi, Chunde Li, Yong-Qiang Liu, Shuaicheng Li, Guo Liang Li, Hailong Liu

Cell Rep Med· December 2025

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Interpretable spatial multi-omics data integration and dimension reduction with SpaMV.
Yang Liu, Kexin Ma, Haoran Xu, Ke Xu, Yunfei Hu, Zhenhan Lin, Jiangli Lin, Shuaicheng Li, Zhixiang Lin

Res Sq· September 2025

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Unveiling spatial heterogeneity in medulloblastoma: A multi-omics analysis of cellular state and geographical organization.
Jiankang Li, Hailong Liu, Ziwei Wang, Jiao Zhang, Xuan Chen, Olivier Saulnier, Pasqualino De Antonellis, Liam D Hendrikse, Jialin Mo, Fei Liu, Yanong Li, Zijia Liu, Meiyu Li, Shouwei Li, Jianfeng Liang, Shuaicheng Li, Chunde Li

Neuro Oncol· July 2025

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MEGA-GO: functions prediction of diverse protein sequence length using Multi-scalE Graph Adaptive neural network.
Yujian Lee, Peng Gao, Yongqi Xu, Ziyang Wang, Shuaicheng Li

Bioinformatics· February 2025

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High cellular plasticity state of medulloblastoma local recurrence and distant dissemination.
Hailong Liu, Jing Zhang, Ziwei Wang, Wei Wang, Dongming Han, Olivier Saulnier, Fei Liu, Zijia Liu, Yanong Li, Youliang Sun, Wenxing Li, Xueling Qi, Shuaicheng Li, Chunde Li, Jiankang Li, Yong-Qiang Liu

Cell Rep Med· January 2025

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TransHLA: a Hybrid Transformer model for HLA-presented epitope detection.
Tianchi Lu, Xueying Wang, Wan Nie, Miaozhe Huo, Shuaicheng Li

Gigascience· January 2025

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Integrated analyses of 5 mC, 5hmC methylation and gene expression reveal pathology-associated AKT3 gene and potential biomarkers for Alzheimer's disease.
Yupei Shen, Weiqiang Zhu, Shuaicheng Li, Zhaofeng Zhang, Jian Zhang, Mingjie Li, Min Li

J Psychiatr Res· October 2024

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Multi-regional sequencing reveals the genetic and immune heterogeneity of non-cancerous tissues in gastric cancer.
Yong Zhou, Shen Li, Yingqi Hu, Xiao Xu, Jiantao Cui, Shuaicheng Li, Ziyu Li

J Pathol· August 2024

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Immune-tumor interaction dictates spatially directed evolution of esophageal squamous cell carcinoma.
Yong Zhou, Shanlan Mo, Heyang Cui, Ruifang Sun, Weimin Zhang, Hongyi Li, Meilin Liu, Huijuan Liu, Ling Zhang, ShuaiCheng Li, Zhihua Liu

Natl Sci Rev· May 2024

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Differential Brain Activation for Four Emotions in VR-2D and VR-3D Modes.
Chuanrui Zhang, Lei Su, Shuaicheng Li, Yunfa Fu

Brain Sci· March 2024

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Translocation of vaginal and cervical low-abundance non-Lactobacillus bacteria notably associate with endometriosis: A pilot study.
Qing Yang, Yinan Wang, Han Cai, Qian Zhou, Liping Zeng, Shuaicheng Li

Microb Pathog· October 2023

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Immune Repertoire Profiling Reveals Its Clinical Application Potential and Triggers for Neuromyelitis Optica Spectrum Disorders.
Yu Miao, Ziyan Shi, Wei Zhang, Lin Zhu, Shanshan Tang, Shuaicheng Li

Neurol Neuroimmunol Neuroinflamm· September 2023

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Correction: On triangle inequalities of correlation-based distances for gene expression profiles.
Jiaxing Chen, Yen Kaow Ng, Lu Lin, Xianglilan Zhang, Shuaicheng Li

BMC Bioinformatics· May 2023

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Baseline gut microbiome impacts probiotics Bacillus licheniformis CMCC63516 in modulating the gut microbiome and preventing antibiotic-associated diarrhea: A double-blind, randomized controlled trial.
Qian Zhou, Wenkui Dai, Yanmin Bao, Jing Chen, Xiaohua Han, Changshan Liu, Shuaicheng Li

Clin Transl Med· April 2023

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On triangle inequalities of correlation-based distances for gene expression profiles.
Jiaxing Chen, Yen Kaow Ng, Lu Lin, Xianglilan Zhang, Shuaicheng Li

BMC Bioinformatics· February 2023

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TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization.
Xueying Wang, Lingxi Chen, Wei Liu, Yuanzheng Zhang, Dawei Liu, Shuaicheng Li

Nucleic Acids Res· January 2023

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eSMC: a statistical model to infer admixture events from individual genomics data.
Yonghui Wang, Zicheng Zhao, Xinyao Miao, Yinan Wang, Xiaobo Qian, Lingxi Chen, Shuaicheng Li

BMC Genomics· December 2022

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Spatial heterogeneity of infiltrating T cells in high-grade serous ovarian cancer revealed by multi-omics analysis.
Bin Yang, Xiong Li, Wei Zhang, Junpeng Fan, Yong Zhou, Wenting Li, Xi Li, Si Liu, Shuaicheng Li

Cell Rep Med· December 2022

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Correction: DENSEN: a convolutional neural network for estimating chronological ages from panoramic radiographs.
Xuedong Wang, Yanle Liu, Xinyao Miao, Yin Chen, Xiao Cao, Shuaicheng Li

BMC Bioinformatics· December 2022

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Manganese-coordinated mRNA vaccines with enhanced mRNA expression and immunogenicity induce robust immune responses against SARS-CoV-2 variants.
Na Fan, Kepan Chen, Rong Zhu, Zhongwei Zhang, Hai Huang, Yongmei Liu, Shuaicheng Li

Sci Adv· December 2022

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The association of cervicovaginal Langerhans cells with clearance of human papillomavirus.
Wenkui Dai, Liming Gui, Hui Du, Shuaicheng Li, Ruifang Wu

Front Immunol· November 2022

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Human papillomavirus integration perspective in small cell cervical carcinoma.
Xiaoli Wang, Wenlong Jia, Mengyao Wang, Jihong Liu, Xianrong Zhou, Zhiqing Liang, Xiangchun Li, Xiong Li, Caili Zhao, Ling Xi, Lin Wang, Li Wu, Aijun Liu, Lili Cao, Shaoping Ling, Lihua Cao, Shuaicheng Li, Shuang Li

Nat Commun· October 2022

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DENSEN: a convolutional neural network for estimating chronological ages from panoramic radiographs.
Xuedong Wang, Yanle Liu, Xinyao Miao, Yin Chen, Xiao Cao, Shuaicheng Li

BMC Bioinformatics· October 2022

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Characterization of somatic structural variations in 528 Chinese individuals with Esophageal squamous cell carcinoma.
Heyang Cui, Yong Zhou, Fang Wang, Caixia Cheng, Weimin Zhang, Ling Zhang, Huijuan Liu, Shuaicheng Li, Zhihua Liu

Nat Commun· October 2022

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