Publications by authors named "Shubham Choudhury"

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CPPsite3: An updated large repository of experimentally validated cell-penetrating peptides.
Nisha Bajiya, Sohana Najrin, Pankaj Kumar, Shubham Choudhury, Ritu Tomer

Drug Discov Today· August 2025

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A large language model for predicting neurotoxic peptides and neurotoxins.
Anand Singh Rathore, Saloni Jain, Shubham Choudhury, Gajendra P S Raghava

Protein Sci· August 2025

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CytoLNCpred-a computational method for predicting cytoplasm associated long non-coding RNAs in 15 cell-lines.
Shubham Choudhury, Naman Kumar Mehta, Gajendra P S Raghava

Front Bioinform· May 2025

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Prediction of Plant Resistance Proteins Using Alignment-Based and Alignment-Free Approaches.
Pushpendra Singh Gahlot, Shubham Choudhury, Nisha Bajiya, Nishant Kumar, Gajendra P S Raghava

Proteomics· March 2025

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Advancement in Anaerobic Ammonia Oxidation Technologies for Industrial Wastewater Treatment and Resource Recovery: A Comprehensive Review and Perspectives.
Pradeep Singh, Monish Bisen, Sourabh Kulshreshtha, Lokender Kumar, Shubham R Choudhury

Bioengineering (Basel)· March 2025

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Prediction of Anti-Freezing Proteins From Their Evolutionary Profile.
Nishant Kumar, Shubham Choudhury, Nisha Bajiya, Sumeet Patiyal, Gajendra P S Raghava

Proteomics· February 2025

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Prediction of hemolytic peptides and their hemolytic concentration.
Anand Singh Rathore, Nishant Kumar, Shubham Choudhury, Naman Kumar Mehta, Gajendra P S Raghava

Commun Biol· February 2025

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ToxinPred 3.0: An improved method for predicting the toxicity of peptides.
Anand Singh Rathore, Shubham Choudhury, Akanksha Arora, Purva Tijare, Gajendra P S Raghava

Comput Biol Med· September 2024

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Genome-based solutions for managing mucormycosis.
Ritu Tomer, Sumeet Patiyal, Dilraj Kaur, Shubham Choudhury, Gajendra P S Raghava

Adv Protein Chem Struct Biol· March 2024

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MRSLpred-a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale.
Shubham Choudhury, Nisha Bajiya, Sumeet Patiyal, Gajendra P S Raghava

Front Bioinform· February 2024

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AntiBP3: A Method for Predicting Antibacterial Peptides against Gram-Positive/Negative/Variable Bacteria.
Nisha Bajiya, Shubham Choudhury, Anjali Dhall, Gajendra P S Raghava

Antibiotics (Basel)· February 2024

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Metaviromic analyses of DNA virus community from sediments of the N-Choe stream, North India.
Adhip Mukhopadhyay, Shubham Choudhury, Manoj Kumar

Virus Res· June 2023

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TNFepitope: A webserver for the prediction of TNF-α inducing epitopes.
Anjali Dhall, Sumeet Patiyal, Shubham Choudhury, Shipra Jain, Kashish Narang

Comput Biol Med· June 2023

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An ensemble method for prediction of phage-based therapy against bacterial infections.
Suchet Aggarwal, Anjali Dhall, Sumeet Patiyal, Shubham Choudhury, Akanksha Arora

Front Microbiol· March 2023

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DMPPred: a tool for identification of antigenic regions responsible for inducing type 1 diabetes mellitus.
Nishant Kumar, Sumeet Patiyal, Shubham Choudhury, Ritu Tomer, Anjali Dhall

Brief Bioinform· January 2023

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Computational identification of repurposed drugs against viruses causing epidemics and pandemics via drug-target network analysis.
Akanksha Rajput, Anamika Thakur, Amber Rastogi, Shubham Choudhury, Manoj Kumar

Comput Biol Med· September 2021

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CoronaVR: A Computational Resource and Analysis of Epitopes and Therapeutics for Severe Acute Respiratory Syndrome Coronavirus-2.
Amit Kumar Gupta, Md Shoaib Khan, Shubham Choudhury, Adhip Mukhopadhyay, Sakshi

Front Microbiol· July 2020

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