Publications by authors named "Shundi Shi"

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Mass Spectrometry-Based Direct Sequencing of tRNAs De Novo and Quantitative Mapping of Multiple RNA Modifications.
Xiaohong Yuan, Yue Su, Benjamin Johnson, Michele Kirchner, Xudong Zhang, Shundi Shi

J Am Chem Soc· September 2024

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A General LC-MS-Based Method for Direct and De Novo Sequencing of RNA Mixtures Containing both Canonical and Modified Nucleotides.
Ning Zhang, Shundi Shi, Xiaohong Yuan, Wenhao Ni, Xuanting Wang

Methods Mol Biol· June 2021

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2D-HELS MS Seq: A General LC-MS-Based Method for Direct and de novo Sequencing of RNA Mixtures with Different Nucleotide Modifications.
Ning Zhang, Shundi Shi, Barney Yoo, Xiaohong Yuan, Wenjia Li

J Vis Exp· July 2020

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Direct Sequencing of tRNA by 2D-HELS-AA MS Seq Reveals Its Different Isoforms and Dynamic Base Modifications.
Ning Zhang, Shundi Shi, Xuanting Wang, Wenhao Ni, Xiaohong Yuan

ACS Chem Biol· June 2020

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A general LC-MS-based RNA sequencing method for direct analysis of multiple-base modifications in RNA mixtures.
Ning Zhang, Shundi Shi, Tony Z Jia, Ashley Ziegler, Barney Yoo

Nucleic Acids Res· November 2019

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Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array.
P Benjamin Stranges, Mirkó Palla, Sergey Kalachikov, Jeff Nivala, Michael Dorwart, Shiv Kumar, Shundi Shi

Proc Natl Acad Sci U S A· November 2016

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Real-time single-molecule electronic DNA sequencing by synthesis using polymer-tagged nucleotides on a nanopore array.
Carl W Fuller, Shiv Kumar, Mintu Porel, Minchen Chien, Arek Bibillo, Shundi Shi

Proc Natl Acad Sci U S A· May 2016

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DNA sequencing by synthesis using 3'-azidomethyl nucleotide reversible terminators and surface-enhanced Raman spectroscopic detection.
Mirkó Palla, Wenjing Guo, Shundi Shi, Zengmin Li, Jian Wu

RSC Adv· January 2014

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Design and synthesis of cleavable biotinylated dideoxynucleotides for DNA sequencing by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.
Chunmei Qiu, Shiv Kumar, Jia Guo, Lin Yu, Wenjing Guo, Shundi Shi

Anal Biochem· August 2012

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Mitochondrial single nucleotide polymorphism genotyping by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using cleavable biotinylated dideoxynucleotides.
Chunmei Qiu, Shiv Kumar, Jia Guo, Jiesheng Lu, Shundi Shi

Anal Biochem· August 2012

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Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides.
Jia Guo, Ning Xu, Zengmin Li, Shenglong Zhang, Jian Wu, Shundi Shi

Proc Natl Acad Sci U S A· July 2008

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3'-O-modified nucleotides as reversible terminators for pyrosequencing.
Jian Wu, Shenglong Zhang, Qinglin Meng, Huanyan Cao, Zengmin Li, Shundi Shi

Proc Natl Acad Sci U S A· October 2007

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Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators.
Jingyue Ju, Dae Hyun Kim, Lanrong Bi, Qinglin Meng, Xiaopeng Bai, Shundi Shi

Proc Natl Acad Sci U S A· December 2006

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Four-color DNA sequencing by synthesis on a chip using photocleavable fluorescent nucleotides.
Tae Seok Seo, Xiaopeng Bai, Dae Hyun Kim, Qinglin Meng, Shundi Shi

Proc Natl Acad Sci U S A· April 2005

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The genomic sequence of the accidental pathogen Legionella pneumophila.
Minchen Chien, Irina Morozova, Shundi Shi, Huitao Sheng, Jing Chen

Science· September 2004

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Comparative sequence analysis of the icm/dot genes in Legionella.
Irina Morozova, Xiaoyan Qu, Shundi Shi, Gifty Asamani, Joseph E Greenberg

Plasmid· March 2004

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Multiplex genotyping of the human beta2-adrenergic receptor gene using solid-phase capturable dideoxynucleotides and mass spectrometry.
Sobin Kim, Shundi Shi, Tomás Bonome, Michael E Ulz, John R Edwards

Anal Biochem· May 2003

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