Publications by authors named "Shunmin He"

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Mitochondrial Genome Variants and Nuclear Mitochondrial DNA Segments in 7331 Individuals from NyuWa and 1KGP.
Yuanxin Wang, Jiajia Wang, Yanyan Li, Peng Zhang, Zhonglong Wang, Shunmin He

Genomics Proteomics Bioinformatics· November 2025

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Genome-wide Genetic Mutations Accumulated in Pigs Genome-edited for Xenotransplantation and Their Filial Generation.
Xueyun Huo 霍学云, Xianhui Sun 孙先辉, Xiangyang Xing 邢向阳, Jing Lu 路静, Jingjing Zhang 张晶晶, Zhenwen Chen 陈振文, Shunmin He 何顺民, Chen Zhang 张晨

Genomics Proteomics Bioinformatics· October 2025

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scIVNL-seq resolves in vivo single-cell RNA dynamics of immune cells during Salmonella infection.
Zhen Xiong, Runyuan Wu, Yuanxin Wang, Yuwei Xu, Cunzhen Li, Shunmin He

Nat Commun· August 2025

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AlphaFold-guided structural analyses of nucleosome binding proteins.
Xin Yang, Haoqiang Zhu, Liuxin Shi, Tingrui Song, Weibin Gong, Shunmin He, Zheng Zhou

Nucleic Acids Res· July 2025

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TOAnnoPriDB: an integrative database for trans-omic annotation and prioritization of non-coding variants across human genome.
Tingrui Song, Yirong Shi, Yanyan Li, Di Hao, Kaixin Zhan, Runsheng Chen, Shunmin He

Sci Bull (Beijing)· June 2025

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Pathogen Adaptation of HLA Alleles and Its Correlation with Autoimmune Diseases in the Han Chinese.
Shuai Liu, Yanyan Li, Tingrui Song, Jingjing Zhang, Peng Zhang, Shunmin He

Genomics Proteomics Bioinformatics· May 2025

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MAPbrain: a multi-omics atlas of the primate brain.
Liangchen Zhuo, Mengdi Wang, Tingrui Song, Suijuan Zhong, Bo Zeng, Shunmin He

Nucleic Acids Res· January 2025

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Enzyme Repertoires and Genomic Insights into Lycium barbarum Pectin Polysaccharide Biosynthesis.
Haiyan Yue, Yiheng Tang, Aixuan Li, Lili Zhang, Yiwei Niu, Shunmin He, Chang Chen, Runsheng Chen

Genomics Proteomics Bioinformatics· January 2025

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Genome-wide investigation of VNTR motif polymorphisms in 8,222 genomes: Implications for biological regulation and human traits.
Sijia Zhang, Qiao Song, Peng Zhang, Xiaona Wang, Rong Guo, Shunmin He

Cell Genom· December 2024

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Adaptive Selection of Cis-regulatory Elements in the Han Chinese.
Shuai Liu, Huaxia Luo, Peng Zhang, Yanyan Li, Di Hao, Shunmin He

Mol Biol Evol· March 2024

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Exploring noncoding variants in genetic diseases: from detection to functional insights.
Ke Wu, Fengxiao Bu, Yang Wu, Gen Zhang, Xin Wang, Shunmin He, Runsheng Chen

J Genet Genomics· February 2024

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Noncoding RNA mutations in cancer.
Honghong Zhou, Xinpei Hao, Peng Zhang, Shunmin He

Wiley Interdiscip Rev RNA· November 2023

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Recent positive selection signatures reveal phenotypic evolution in the Han Chinese population.
Huaxia Luo, Peng Zhang, Wanyu Zhang, Yu Zheng, Di Hao, Hua Chen, Shunmin He

Sci Bull (Beijing)· October 2023

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Comprehensive landscape of resistance mechanisms for neoadjuvant therapy in esophageal squamous cell carcinoma by single-cell transcriptomics.
Yushang Yang, Yanguo Li, Haopeng Yu, Zhenyu Ding, Longqi Chen, Shunmin He

Signal Transduct Target Ther· August 2023

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Characterization of genome-wide STR variation in 6487 human genomes.
Yirong Shi, Yiwei Niu, Peng Zhang, Huaxia Luo, Shuai Liu, Shunmin He

Nat Commun· April 2023

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Was Wuhan the early epicenter of the COVID-19 pandemic?-A critique.
Yanan Cao, Lingling Chen, Hua Chen, Yupeng Cun, Xiaofeng Dai, Shunmin He, Shunping He, XiongLei He, Zheng Hu, Jinchen Li, Shuai Cheng Li, Sheng-Ce Tao, Houfeng Zheng

Natl Sci Rev· April 2023

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NPInter v5.0: ncRNA interaction database in a new era.
Yu Zheng, Huaxia Luo, Xueyi Teng, Xinpei Hao, Xiaoyu Yan, Yiheng Tang, Runsheng Chen, Shunmin He

Nucleic Acids Res· January 2023

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Long noncoding RNA MAGI2-AS3 regulates the HO level and cell senescence via HSPA8.
Yingmin Zhang, Xinhua Qiao, Lihui Liu, Wensheng Han, Qinghua Liu, Yiheng Tang, Shunmin He, Runsheng Chen, Chang Chen

Redox Biol· August 2022

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Novel MDM2 Inhibitor XR-2 Exerts Potent Anti-Tumor Efficacy and Overcomes Enzalutamide Resistance in Prostate Cancer.
Meng Wu, Jingyi Cui, Huimin Hou, Ying Li, Shengjie Liu, Shunmin He

Front Pharmacol· April 2022

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Mutational Pattern Induced by 5-Fluorouracil and Oxaliplatin in the Gut Microbiome.
Li Wan, Hexin Li, Gaoyuan Sun, Lili Zhang, Hongtao Xu, Shunmin He

Front Microbiol· April 2022

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Characterizing mobile element insertions in 5675 genomes.
Yiwei Niu, Xueyi Teng, Honghong Zhou, Yirong Shi, Yanyan Li, Yiheng Tang, Shunmin He

Nucleic Acids Res· March 2022

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piRBase: integrating piRNA annotation in all aspects.
Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Shunmin He, Runsheng Chen

Nucleic Acids Res· January 2022

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NyuWa Genome resource: A deep whole-genome sequencing-based variation profile and reference panel for the Chinese population.
Peng Zhang, Huaxia Luo, Yanyan Li, You Wang, Jiajia Wang, Yu Zheng, Shunmin He

Cell Rep· November 2021

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SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling.
Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Runsheng Chen, Shunmin He

Genomics Proteomics Bioinformatics· August 2021

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Global profiling of RNA-binding protein target sites by LACE-seq.
Ruibao Su, Li-Hua Fan, Changchang Cao, Lei Wang, Zongchang Du, Shunmin He, Catherine C L Wong

Nat Cell Biol· June 2021

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