Publications by authors named "Sijie Yao"

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Qiangxin bushen decoction attenuates cardiorenal syndrome type II via AMPK/FOXO1-mediated ferroptosis pathway: A multi-omics and experimental study.
Shuo Han, Hui Zhang, Junfeng Qian, Sijie Yao, Yali Sun

Phytomedicine· November 2025

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Biological effects of graphene oxide-induced fluorescent marker perturbation in Caenorhabditis elegans via food chain exposure.
Xun Luo, Junfang Tu, Hui Xu, Enhui Xia, Sijie Yao

Ecotoxicol Environ Saf· September 2025

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SmartImpute is a targeted imputation framework for single-cell transcriptome data.
Sijie Yao, Tingyi Li, Joshua T Davis, Timothy I Shaw, Xiaoqing Yu

Cell Rep Methods· August 2025

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Machine learning analysis of ARVC informed by sodium channel protein-based interactome networks.
Yanan Zhu, Hui Zhang, Xuan Zhao, Xin Wang, Lina Xing, Sijie Yao

Front Pharmacol· July 2025

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Shared-weight graph framework for comprehensive protein stability prediction across diverse mutation types.
Gen Li, Sijie Yao, Long Fan

Brief Bioinform· March 2025

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GPS-Net: Discovering prognostic pathway modules based on network regularized kernel learning.
Sijie Yao, Kaiqiao Li, Tingyi Li, Xiaoqing Yu, Pei Fen Kuan

Am J Hum Genet· December 2024

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Identifying targeted cell-free DNA methylation regions in head and neck cancer via paired methylome analysis.
Tingyi Li, Krupal B Patel, Xiaoqing Yu, Sijie Yao, Liang Wang

Res Sq· November 2024

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From Detection to Cure - Emerging Roles for Urinary Tumor DNA (utDNA) in Bladder Cancer.
Joshua A Linscott, Hiroko Miyagi, Prithvi B Murthy, Sijie Yao, G Daniel Grass

Curr Oncol Rep· August 2024

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SmartImpute: A Targeted Imputation Framework for Single-cell Transcriptome Data.
Sijie Yao, Xiaoqing Yu, Xuefeng Wang

bioRxiv· July 2024

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GPS-Net: discovering prognostic pathway modules based on network regularized kernel learning.
Sijie Yao, Kaiqiao Li, Tingyi Li, Xiaoqing Yu, Pei Fen Kuan

bioRxiv· July 2024

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CGPA: multi-context insights from the cancer gene prognosis atlas.
Biwei Cao, Xiaoqing Yu, Gullermo Gonzalez, Amith R Murthy, Tingyi Li, Sijie Yao

bioRxiv· July 2024

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Bidirectional extracellular electron transfer pathways of Geobacter sulfurreducens biofilms: Molecular insights into extracellular polymeric substances.
Guiqin Yang, Xue Xia, Weijie Nie, Baoli Qin, Tiqun Hou, Sijie Yao

Environ Res· March 2024

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The survival strategy of direct interspecies electron transfer-capable coculture under electron donor-limited environments.
Guiqin Yang, Canfen Lin, Tiqun Hou, Xian Wu, Yanlun Fang, Sijie Yao

Sci Total Environ· January 2024

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ProSTAGE: Predicting Effects of Mutations on Protein Stability by Using Protein Embeddings and Graph Convolutional Networks.
Gen Li, Sijie Yao, Long Fan

J Chem Inf Model· January 2024

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Characterization of two novel Fe(III)-reducing and electrogenic bacteria, sp. nov. and sp. nov., isolated from mangrove sediment.
Sijie Yao, Xueying Zhang, Annian Lin, Xue Xia, Lijun Lin

Int J Syst Evol Microbiol· October 2023

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Prediction of hot spots towards drug discovery by protein sequence embedding with 1D convolutional neural network.
Youzhi Zhang, Sijie Yao, Peng Chen

PLoS One· September 2023

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Echoes in a "tree hole": A qualitative study on the service needs and responses at an antidrug helpline in China.
Yan-Yan Chen, Liu Hong, Liming Fu, Sijie Yao

J Subst Use Addict Treat· July 2023

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Prediction-oriented prognostic biomarker discovery with survival machine learning methods.
Sijie Yao, Biwei Cao, Tingyi Li, Denise Kalos, Yading Yuan

NAR Genom Bioinform· June 2023

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Unveiling targeted cell-free DNA methylation regions through paired methylome analysis of tumor and normal tissues.
Tingyi Li, Krupal B Patel, Xiaoqing Yu, Sijie Yao, Liang Wang

bioRxiv· June 2023

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Statistical and Machine Learning Methods for Discovering Prognostic Biomarkers for Survival Outcomes.
Sijie Yao, Xuefeng Wang

Methods Mol Biol· March 2023

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LOX-1 Regulation in Anti-atherosclerosis of Active Compounds of Herbal Medicine: Current Knowledge and the New Insight.
Si-Jie Yao, Tao-Hua Lan, Xin-Yu Zhang, Qiao-Huang Zeng, Wen-Jing Xu

Chin J Integr Med· February 2023

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A subnetwork-based framework for prioritizing and evaluating prognostic gene modules from cancer transcriptome data.
Biwei Cao, Krupal B Patel, Tingyi Li, Sijie Yao, Christine H Chung

iScience· February 2023

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Xin-Li-Fang efficacy and safety for patients with chronic heart failure: A study protocol for a randomized, double-blind, and placebo-controlled trial.
Tong Liu, Sijie Yao, Wei Jiang, Taohua Lan, Wenjing Xu, Ping Yao

Front Cardiovasc Med· January 2023

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sp. nov., a novel species isolated from mangrove sediment.
Sijie Yao, Guiqin Yang, Xueying Zhang, Canfen Lin, Li Zhuang

Int J Syst Evol Microbiol· November 2022

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Shewanella shenzhenensis sp. nov., a novel Fe(III)-reducing bacterium with abundant possible cytochrome genes, isolated from mangrove sediment.
Xueying Zhang, Guiqin Yang, Sijie Yao, Li Zhuang

Antonie Van Leeuwenhoek· October 2022

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