Publications by authors named "Silke D Werle"

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CLL to Richter syndrome: Integrating network strategies with experiments elucidating disease drivers and personalized therapies.
Julia Maier, Julian D Schwab, Silke D Werle, Ralf Marienfeld, Stephan Stilgenbauer

Sci Adv· September 2025

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Uncovering the Understanding of the Concept of Patient Similarity in Cancer Research and Treatment: Scoping Review.
Iryna Manuilova, Jan Bossenz, Annemarie Bianka Weise, Dominik Boehm, Marvin Döbel, Silke D Werle

J Med Internet Res· August 2025

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Boolean network modeling and its integration with experimental read-outs : An interdisciplinary presentation using a leukemia model.
Julia Maier, Julian D Schwab, Silke D Werle, Ralf Marienfeld, Peter Möller

Pathologie (Heidelb)· November 2024

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Identifications of Similarity Metrics for Patients With Cancer: Protocol for a Scoping Review.
Iryna Manuilova, Jan Bossenz, Annemarie Bianka Weise, Dominik Boehm, Cosima Strantz, Silke D Werle

JMIR Res Protoc· September 2024

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Prediction of resistance to bevacizumab plus FOLFOX in metastatic colorectal cancer-Results of the prospective multicenter PERMAD trial.
Thomas Seufferlein, Ludwig Lausser, Alexander Stein, Dirk Arnold, Gerald Prager, Silke D Werle

PLoS One· June 2024

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GatekeepR: an R Shiny application for the identification of nodes with high dynamic impact in Boolean networks.
Felix M Weidner, Nensi Ikonomi, Silke D Werle, Julian D Schwab, Hans A Kestler

Bioinformatics· January 2024

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The Necessity of Interoperability to Uncover the Full Potential of Digital Health Devices.
Julian D Schwab, Silke D Werle, Rolf Hühne, Hannah Spohn, Udo X Kaisers

JMIR Med Inform· December 2023

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A systems biology approach to define mechanisms, phenotypes, and drivers in PanNETs with a personalized perspective.
Silke D Werle, Nensi Ikonomi, Ludwig Lausser, Annika M T U Kestler, Felix M Weidner

NPJ Syst Biol Appl· June 2023

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Leveraging quantum computing for dynamic analyses of logical networks in systems biology.
Felix M Weidner, Julian D Schwab, Sabine Wölk, Felix Rupprecht, Nensi Ikonomi, Silke D Werle

Patterns (N Y)· March 2023

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CANTATA-prediction of missing links in Boolean networks using genetic programming.
Christoph Müssel, Nensi Ikonomi, Silke D Werle, Felix M Weidner, Markus Maucher

Bioinformatics· October 2022

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Response to the letter to the editor: On the feasibility of dynamical analysis of network models of biochemical regulation.
Felix M Weidner, Julian D Schwab, Silke D Werle, Nensi Ikonomi, Ludwig Lausser

Bioinformatics· July 2022

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Discrete Logic Modeling of Cell Signaling Pathways.
Nensi Ikonomi, Silke D Werle, Julian D Schwab, Hans A Kestler

Methods Mol Biol· April 2022

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Interaction Empowerment in Mobile Health: Concepts, Challenges, and Perspectives.
Marietta Hamberger, Nensi Ikonomi, Julian D Schwab, Silke D Werle, Axel Fürstberger

JMIR Mhealth Uhealth· April 2022

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Identification of dynamic driver sets controlling phenotypical landscapes.
Silke D Werle, Nensi Ikonomi, Julian D Schwab, Johann M Kraus, Felix M Weidner

Comput Struct Biotechnol J· April 2022

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Capturing dynamic relevance in Boolean networks using graph theoretical measures.
Felix M Weidner, Julian D Schwab, Silke D Werle, Nensi Ikonomi, Ludwig Lausser

Bioinformatics· October 2021

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Reconstructing Boolean network ensembles from single-cell data for unraveling dynamics in the aging of human hematopoietic stem cells.
Julian D Schwab, Nensi Ikonomi, Silke D Werle, Felix M Weidner, Hartmut Geiger

Comput Struct Biotechnol J· September 2021

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Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System.
Gunnar Völkel, Axel Fürstberger, Julian D Schwab, Silke D Werle, Nensi Ikonomi

J Med Internet Res· June 2021

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Metadata Correction: Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System.
Gunnar Völkel, Axel Fürstberger, Julian D Schwab, Silke D Werle, Nensi Ikonomi

J Med Internet Res· June 2021

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Supporting Medical Staff from Psycho-Oncology with Smart Mobile Devices: Insights into the Development Process and First Results.
Johannes Schobel, Madeleine Volz, Katharina Hörner, Peter Kuhn, Franz Jobst, Silke D Werle

Int J Environ Res Public Health· May 2021

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Unraveling the Molecular Tumor-Promoting Regulation of Cofilin-1 in Pancreatic Cancer.
Silke D Werle, Julian D Schwab, Marina Tatura, Sandra Kirchhoff, Robin Szekely

Cancers (Basel)· February 2021

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