Publications by authors named "Simen R Sandve"

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Sequence-based chromatin activity modeling and regulatory impact prediction of genetic variants in farmed animals using deep learning.
Dat Thanh Nguyen, Tim Martin Knutsen, Simen R Sandve, Sigbjørn Lien, Lars Grønvold

NAR Genom Bioinform· December 2025

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Calcium starvation leads to strain-specific gene regulation of lipid and carotenoid production in Mucor circinelloides.
Helle Tessand Baalsrud, Dana Byrtusova, Thu-Hien To, Ida Emilie Larsen, Veronica Aarvik Bøe, Simen Rød Sandve

G3 (Bethesda)· November 2025

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Photoperiodic history modulates the response of the saccus vasculosus transcriptome to seawater exposure in Atlantic salmon.
Alexander C West, Shona H Wood, Marianne Iversen, Mattis Jayme van Dalum, Even H Jørgensen, Simen R Sandve

J Comp Physiol A Neuroethol Sens Neural Behav Physiol· November 2025

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A nextflow pipeline for molecular quantitative trait loci mapping in small sample size datasets with an application in Atlantic salmon.
Dat Thanh Nguyen, Simen R Sandve, Sigbjørn Lien, Lars Grønvold

BMC Genomics· November 2025

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Gamma radiation-induced molecular toxicity and effects on pluripotent stem cells of the radiosensitive conifer Norway spruce (Picea abies).
Payel Bhattacharjee, YeonKyeong Lee, Marcos Viejo, Gareth B Gillard, Simen Rød Sandve

Planta· September 2025

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TAD conservation in vertebrate genomes is driven by stabilising selection.
Fabiana Patalano, Simen Rød Sandve, Rein Aasland, Jonas Paulsen

BMC Biol· August 2025

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The role of transposon activity in shaping -regulatory element evolution after whole-genome duplication.
Øystein Monsen, Lars Grønvold, Alex Datsomor, Thomas Harvey, James Kijas, Simen Rød Sandve

Genome Res· March 2025

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Transcriptomic profiling of gill biopsies to define predictive markers for seawater survival in farmed Atlantic salmon.
Lars Grønvold, Mattis J van Dalum, Anja Striberny, Domniki Manousi, Trine Ytrestøyl, Simen R Sandve

J Fish Biol· December 2024

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Transcriptionally distinct B cell profiles in systemic immune tissues and peritoneal cavity of Atlantic salmon () infected with salmonid alphavirus subtype 3.
Shiferaw Jenberie, Simen Rød Sandve, Thu-Hien To, Matthew Peter Kent, Espen Rimstad

Front Immunol· December 2024

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Genomic and functional characterization of the Atlantic salmon gut microbiome in relation to nutrition and health.
Arturo Vera-Ponce de León, Tim Hensen, Matthias Hoetzinger, Shashank Gupta, Bronson Weston, Simen R Sandve

Nat Microbiol· November 2024

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The need for high-resolution gut microbiome characterization to design efficient strategies for sustainable aquaculture production.
Shashank Gupta, Arturo Vera-Ponce de León, Miyako Kodama, Matthias Hoetzinger, Cecilie G Clausen, Simen R Sandve

Commun Biol· October 2024

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The genome regulatory landscape of Atlantic salmon liver through smoltification.
Thomas N Harvey, Gareth B Gillard, Line L Røsæg, Fabian Grammes, Øystein Monsen, Simen R Sandve

PLoS One· April 2024

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Hypothalamic tanycytes as mediators of maternally programmed seasonal plasticity.
Vebjørn J Melum, Cristina Sáenz de Miera, Fredrik A F Markussen, Fernando Cázarez-Márquez, Catherine Jaeger, Simen R Sandve

Curr Biol· February 2024

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Gene family expansion and functional diversification of chitinase and chitin synthase genes in Atlantic salmon (Salmo salar).
Matilde Mengkrog Holen, Gustav Vaaje-Kolstad, Matthew Peter Kent, Simen Rød Sandve

G3 (Bethesda)· June 2023

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Functional validation of transposable element-derived cis-regulatory elements in Atlantic salmon.
Hanna M Sahlström, Alex K Datsomor, Øystein Monsen, Torgeir R Hvidsten, Simen Rød Sandve

G3 (Bethesda)· April 2023

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Efficient transfection of Atlantic salmon primary hepatocyte cells for functional assays and gene editing.
Alex K Datsomor, Ragnhild Wilberg, Jacob S Torgersen, Simen R Sandve, Thomas N Harvey

G3 (Bethesda)· April 2023

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Analyses of Genome Regulatory Evolution Following Whole-Genome Duplication Using the Phylogenetic EVE Model.
Ksenia Arzumanova, Rori V Rohlfs, Lars Grønvold, Marius A Strand, Torgeir R Hvidsten, Simen R Sandve

Methods Mol Biol· February 2023

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Molecular Regulation of Biosynthesis of Long Chain Polyunsaturated Fatty Acids in Atlantic Salmon.
Alex K Datsomor, Gareth Gillard, Yang Jin, Rolf E Olsen, Simen R Sandve

Mar Biotechnol (NY)· August 2022

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SALARECON connects the Atlantic salmon genome to growth and feed efficiency.
Maksim Zakhartsev, Filip Rotnes, Marie Gulla, Ove Øyås, Jesse C J van Dam, Simen R Sandve

PLoS Comput Biol· June 2022

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Genome-Wide Reconstruction of Rediploidization Following Autopolyploidization across One Hundred Million Years of Salmonid Evolution.
Manu Kumar Gundappa, Thu-Hien To, Lars Grønvold, Samuel A M Martin, Sigbjørn Lien, Simen R Sandve

Mol Biol Evol· January 2022

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Immunologic Profiling of the Atlantic Salmon Gill by Single Nuclei Transcriptomics.
Alexander C West, Yasutaka Mizoro, Shona H Wood, Louise M Ince, Marianne Iversen, Simen Rød Sandve

Front Immunol· October 2021

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Chromosome-Level Genome Assembly of Chinese Sucker (Myxocyprinus asiaticus) Reveals Strongly Conserved Synteny Following a Catostomid-Specific Whole-Genome Duplication.
Trevor J Krabbenhoft, Daniel J MacGuigan, Nathan J C Backenstose, Hannah Waterman, Tianying Lan, Simen R Sandve

Genome Biol Evol· September 2021

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Photoperiod-dependent developmental reprogramming of the transcriptional response to seawater entry in Atlantic salmon (Salmo salar).
Marianne Iversen, Teshome Mulugeta, Alexander C West, Even H Jørgensen, Samuel A M Martin, Simen Rød Sandve

G3 (Bethesda)· April 2021

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Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication.
Gareth B Gillard, Lars Grønvold, Line L Røsæg, Matilde Mengkrog Holen, Øystein Monsen, Simen R Sandve

Genome Biol· April 2021

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Diet and Life Stage-Associated Lipidome Remodeling in Atlantic Salmon.
Yang Jin, Thomas Nelson Harvey, Zdenka Bartosova, Sahar Hassani, Per Bruheim, Simen Rød Sandve

J Agric Food Chem· March 2021

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