Publications by authors named "Simon A Travers"

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Structural Rearrangements Maintain the Glycan Shield of an HIV-1 Envelope Trimer After the Loss of a Glycan.
Roux-Cil Ferreira, Oliver C Grant, Thandeka Moyo, Jeffrey R Dorfman, Robert J Woods, Simon A Travers

Sci Rep· October 2018

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Chinks in the armor of the HIV-1 Envelope glycan shield: Implications for immune escape from anti-glycan broadly neutralizing antibodies.
Thandeka Moyo, Roux-Cil Ferreira, Reyaaz Davids, Zarinah Sonday, Penny L Moore, Simon A Travers

Virology· January 2017

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Characterizing the Diverse Mutational Pathways Associated with R5-Tropic Maraviroc Resistance: HIV-1 That Uses the Drug-Bound CCR5 Coreceptor.
Xiaowei Jiang, Felix Feyertag, Conor J Meehan, Grace P McCormack, Simon A Travers

J Virol· November 2015

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Ability to develop broadly neutralizing HIV-1 antibodies is not restricted by the germline Ig gene repertoire.
Cathrine Scheepers, Ram K Shrestha, Bronwen E Lambson, Katherine J L Jackson, Imogen A Wright, Simon A Travers

J Immunol· May 2015

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The influence of N-linked glycans on the molecular dynamics of the HIV-1 gp120 V3 loop.
Natasha T Wood, Elisa Fadda, Robert Davis, Oliver C Grant, Joanne C Martin, Simon A Travers

PLoS One· October 2014

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Coreceptor usage, diversity, and divergence in drug-naive and drug-exposed individuals from Malawi, infected with HIV-1 subtype C for more than 20 years.
Ishla Seager, Simon A Travers, Michael D Leeson, Amelia C Crampin, Neil French

AIDS Res Hum Retroviruses· October 2014

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HIV infection in high school students in rural South Africa: role of transmissions among students.
Ayesha B M Kharsany, Thulasizwe John Buthelezi, Janet A Frohlich, Nonhlanhla Yende-Zuma, Natasha Samsunder, Simon A Travers

AIDS Res Hum Retroviruses· October 2014

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RAMICS: trainable, high-speed and biologically relevant alignment of high-throughput sequencing reads to coding DNA.
Imogen A Wright, Simon A Travers

Nucleic Acids Res· July 2014

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QTrim: a novel tool for the quality trimming of sequence reads generated using the Roche/454 sequencing platform.
Ram Krishna Shrestha, Baruch Lubinsky, Vijay B Bansode, Mónica B J Moinz, Grace P McCormack, Simon A Travers

BMC Bioinformatics· January 2014

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Conservation, Compensation, and Evolution of N-Linked Glycans in the HIV-1 Group M Subtypes and Circulating Recombinant Forms.
Simon A Travers

ISRN AIDS· September 2013

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Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing.
Vijay Bansode, Grace P McCormack, Amelia C Crampin, Bagrey Ngwira, Ram K Shrestha, Simon A Travers

BMC Infect Dis· January 2013

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Appraising the performance of genotyping tools in the prediction of coreceptor tropism in HIV-1 subtype C viruses.
Saleema Crous, Ram Krishna Shrestha, Simon A Travers

BMC Infect Dis· September 2012

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Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen.
Randall Fisher, Gert U van Zyl, Simon A A Travers, Sergei L Kosakovsky Pond, Susan Engelbrech

J Virol· June 2012

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HIV type 1 mutational patterns in HIV type 1 subtype C-infected long-term survivors in Karonga District Malawi: further analysis and correction.
Ishla Seager, Michael D Leeson, Amelia C Crampin, Dominic Mulawa, Neil French, Simon A A Travers

AIDS Res Hum Retroviruses· March 2012

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Phylogenetic relationships of the marine Haplosclerida (Phylum Porifera) employing ribosomal (28S rRNA) and mitochondrial (cox1, nad1) gene sequence data.
Niamh E Redmond, Jean Raleigh, Rob W M van Soest, Michelle Kelly, Simon A A Travers

PLoS One· January 2012

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Reverse transcriptase drug resistance mutations in HIV-1 subtype C infected patients on ART in Karonga District, Malawi.
Vijay B Bansode, Simon Aa Travers, Amelia C Crampin, Bagrey Ngwira, Neil French

AIDS Res Ther· October 2011

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Drug resistance mutations in drug-naive HIV type 1 subtype C-infected individuals from rural Malawi.
Vijay Bansode, Zuzanna J Drebert, Simon A A Travers, Emmanuel Banda, Anna Molesworth

AIDS Res Hum Retroviruses· April 2011

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Emergence, dominance, and possible decline of CXCR4 chemokine receptor usage during the course of HIV infection.
Conor J Meehan, Jessica A Hedge, David L Robertson, Grace P McCormack, Simon A A Travers

J Med Virol· December 2010

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A study of the coevolutionary patterns operating within the env gene of the HIV-1 group M subtypes.
Simon A A Travers, Damien C Tully, Grace P McCormack, Mario A Fares

Mol Biol Evol· December 2007

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Functional coevolutionary networks of the Hsp70-Hop-Hsp90 system revealed through computational analyses.
Simon A A Travers, Mario A Fares

Mol Biol Evol· April 2007

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A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses.
Mario A Fares, Simon A A Travers

Genetics· May 2006

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Emergence of a three codon deletion in gag p17 in HIV type 1 subtype C long-term survivors, and general population spread.
Grace P McCormack, Judith R Glynn, Jonathan P Clewley, Amelia C Crampin, Simon A A Travers

AIDS Res Hum Retroviruses· February 2006

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Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes.
Simon A A Travers, Mary J O'Connell, Grace P McCormack, James O McInerney

J Virol· February 2005

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Does a tree-like phylogeny only exist at the tips in the prokaryotes?
Christopher J Creevey, David A Fitzpatrick, Gayle K Philip, Rhoda J Kinsella, Mary J O'Connell, Simon A Travers

Proc Biol Sci· December 2004

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Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1.
Simon A A Travers, Jonathan P Clewley, Judith R Glynn, Paul E M Fine, Amelia C Crampin

J Virol· October 2004

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