Publications by authors named "Simon Jupp"

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F
Features of a FAIR vocabulary.
Fuqi Xu, Nick Juty, Carole Goble, Simon Jupp, Helen Parkinson

J Biomed Semantics· June 2023

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ELIXIR biovalidator for semantic validation of life science metadata.
Isuru Liyanage, Tony Burdett, Bert Droesbeke, Karoly Erdos, Rolando Fernandez, Simon Jupp

Bioinformatics· May 2022

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A Simple Standard for Sharing Ontological Mappings (SSSOM).
Nicolas Matentzoglu, James P Balhoff, Susan M Bello, Chris Bizon, Matthew Brush, Simon Jupp

Database (Oxford)· May 2022

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A compendium of uniformly processed human gene expression and splicing quantitative trait loci.
Nurlan Kerimov, James D Hayhurst, Kateryna Peikova, Jonathan R Manning, Peter Walter, Simon Jupp

Nat Genet· September 2021

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The Polygenic Score Catalog as an open database for reproducibility and systematic evaluation.
Samuel A Lambert, Laurent Gil, Simon Jupp, Scott C Ritchie, Yu Xu

Nat Genet· April 2021

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Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics.
Maya Ghoussaini, Edward Mountjoy, Miguel Carmona, Gareth Peat, Ellen M Schmidt, Simon Jupp

Nucleic Acids Res· January 2021

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Expression Atlas update: from tissues to single cells.
Irene Papatheodorou, Pablo Moreno, Jonathan Manning, Alfonso Muñoz-Pomer Fuentes, Nancy George, Simon Jupp

Nucleic Acids Res· January 2020

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The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species.
Kent A Shefchek, Nomi L Harris, Michael Gargano, Nicolas Matentzoglu, Deepak Unni, Simon Jupp

Nucleic Acids Res· January 2020

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The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research.
Jade Hotchkiss, Noluthando Manyisa, Samuel Mawuli Adadey, Oluwafemi Gabriel Oluwole, Edmond Wonkam, Simon Jupp

Genes (Basel)· November 2019

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Ontology mapping for semantically enabled applications.
Ian Harrow, Rama Balakrishnan, Ernesto Jimenez-Ruiz, Simon Jupp, Jane Lomax

Drug Discov Today· October 2019

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Harmonising phenomics information for a better interoperability in the rare disease field.
Sylvie Maiella, Annie Olry, Marc Hanauer, Valérie Lanneau, Halima Lourghi, Simon Jupp

Eur J Med Genet· November 2018

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Comparison, alignment, and synchronization of cell line information between CLO and EFO.
Edison Ong, Sirarat Sarntivijai, Simon Jupp, Helen Parkinson, Yongqun He

BMC Bioinformatics· December 2017

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The cellular microscopy phenotype ontology.
Simon Jupp, James Malone, Tony Burdett, Jean-Karim Heriche, Eleanor Williams

J Biomed Semantics· November 2017

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OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets.
Yasset Perez-Riverol, Tobias Ternent, Maximilian Koch, Harald Barsnes, Olga Vrousgou, Simon Jupp

Proteomics· October 2017

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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.
Julie A McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Simon Jupp

PLoS Biol· June 2017

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Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.
Sirarat Sarntivijai, Drashtti Vasant, Simon Jupp, Gary Saunders, A Patrícia Bento

J Biomed Semantics· October 2016

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Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates.
Simon Jupp, Tony Burdett, Danielle Welter, Sirarat Sarntivijai, Helen Parkinson

J Biomed Semantics· October 2016

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Developing a web-based SKOS editor.
Mike Conway, Artem Khojoyan, Fariba Fana, William Scuba, Melissa Castine, Simon Jupp

J Biomed Semantics· October 2016

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The health care and life sciences community profile for dataset descriptions.
Michel Dumontier, Alasdair J G Gray, M Scott Marshall, Vladimir Alexiev, Peter Ansell, Simon Jupp

PeerJ· September 2016

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Proceedings of a Sickle Cell Disease Ontology workshop - Towards the first comprehensive ontology for Sickle Cell Disease.
Nicola Mulder, Victoria Nembaware, Adekunle Adekile, Kofi A Anie, Baba Inusa, Simon Jupp

Appl Transl Genom· June 2016

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Ten Simple Rules for Selecting a Bio-ontology.
James Malone, Robert Stevens, Simon Jupp, Tom Hancocks, Helen Parkinson

PLoS Comput Biol· February 2016

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Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.
Robert Petryszak, Maria Keays, Y Amy Tang, Nuno A Fonseca, Elisabet Barrera, Simon Jupp

Nucleic Acids Res· January 2016

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T
The EBI RDF platform: linked open data for the life sciences.
Simon Jupp, James Malone, Jerven Bolleman, Marco Brandizi, Mark Davies

Bioinformatics· May 2014

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E
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
Robert Petryszak, Tony Burdett, Benedetto Fiorelli, Nuno A Fonseca, Mar Gonzalez-Porta, Simon Jupp

Nucleic Acids Res· January 2014

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The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases.
Panagiotis Moulos, Julie Klein, Simon Jupp, Robert Stevens, Jean-Loup Bascands

BMC Bioinformatics· July 2013

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