Publications by authors named "Simon Mochrie"

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The LINC complex component Kms1 and CENP-B protein Cbp1 cooperate to enforce faithful homology-directed DNA repair at the nuclear periphery in .
Alyssa Laffitte, Dongxu Lin, Yingzhen Jenny Tian, Na Liu, C Patrick Lusk, Simon G J Mochrie

Genes Dev· December 2025

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The LINC complex component Kms1 and CENP-B protein Cbp1 cooperate to enforce faithful homology-directed DNA repair at the nuclear periphery in .
Alyssa Laffitte, Dongxu Lin, Yingzhen Jenny Tian, Na Liu, C Patrick Lusk, Simon G J Mochrie

bioRxiv· October 2025

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Coarse-grained chromatin dynamics by tracking multiple similarly labeled gene loci.
Alexander Mader, Andrew I Rodriguez, Tianyu Yuan, Ivan Surovtsev, Megan C King, Simon G J Mochrie

Biophys J· July 2025

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Coarse-grained chromatin dynamics by tracking multiple similarly labeled gene loci.
Alexander Mader, Andrew I Rodriguez, Tianyu Yuan, Ivan Surovtsev, Megan C King, Simon G J Mochrie

bioRxiv· March 2025

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Cohesin distribution alone predicts chromatin organization in yeast via conserved-current loop extrusion.
Tianyu Yuan, Hao Yan, Kevin C Li, Ivan Surovtsev, Megan C King, Simon G J Mochrie

Genome Biol· November 2024

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The condensation of HP1α/Swi6 imparts nuclear stiffness.
Jessica F Williams, Ivan V Surovtsev, Sarah M Schreiner, Ziyuan Chen, Gulzhan Raiymbek, Simon G J Mochrie

Cell Rep· July 2024

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Identifying topologically associating domains using differential kernels.
Luka Maisuradze, Megan C King, Ivan V Surovtsev, Simon G J Mochrie, Mark D Shattuck

PLoS Comput Biol· July 2024

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Effect of loops on the mean-square displacement of Rouse-model chromatin.
Tianyu Yuan, Hao Yan, Mary Lou P Bailey, Jessica F Williams, Ivan Surovtsev, Simon G J Mochrie

Phys Rev E· April 2024

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Imaging Proteins Sensitive to Direct Fusions Using Transient Peptide-Peptide Interactions.
Zoe Gidden, Curran Oi, Emily J Johnston, Zuzanna Konieczna, Haresh Bhaskar, Simon G J Mochrie

Nano Lett· November 2023

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Loops and the activity of loop extrusion factors constrain chromatin dynamics.
Mary Lou P Bailey, Ivan Surovtsev, Jessica F Williams, Hao Yan, Tianyu Yuan, Simon G J Mochrie

Mol Biol Cell· July 2023

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Uncovering diffusive states of the yeast membrane protein, Pma1, and how labeling method can change diffusive behavior.
Mary Lou P Bailey, Susan E Pratt, Michael Hinrichsen, Yongdeng Zhang, Joerg Bewersdorf, Simon G J Mochrie

Eur Phys J E Soft Matter· June 2023

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Extrusion of chromatin loops by a composite loop extrusion factor.
Hao Yan, Ivan Surovtsev, Jessica F Williams, Mary Lou P Bailey, Megan C King, Simon G J Mochrie

Phys Rev E· August 2021

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Covariance distributions in single particle tracking.
Mary Lou P Bailey, Hao Yan, Ivan Surovtsev, Jessica F Williams, Megan C King, Simon G J Mochrie

Phys Rev E· March 2021

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PAINT using proteins: A new brush for super-resolution artists.
Curran Oi, Simon G J Mochrie, Mathew H Horrocks, Lynne Regan

Protein Sci· November 2020

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LIVE-PAINT allows super-resolution microscopy inside living cells using reversible peptide-protein interactions.
Curran Oi, Zoe Gidden, Louise Holyoake, Owen Kantelberg, Simon Mochrie

Commun Biol· August 2020

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WASP family proteins regulate the mobility of the B cell receptor during signaling activation.
Ivan Rey-Suarez, Brittany A Wheatley, Peter Koo, Anshuman Bhanja, Zhou Shu, Simon Mochrie

Nat Commun· January 2020

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Applying Perturbation Expectation-Maximization to Protein Trajectories of Rho GTPases.
Peter K Koo, Simon G J Mochrie

Methods Mol Biol· March 2019

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A versatile image analysis platform for three-dimensional nuclear reconstruction.
Jessica F Williams, Simon G J Mochrie, Megan C King

Methods· March 2019

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Multiplexed fluctuation-dissipation-theorem calibration of optical tweezers inside living cells.
Hao Yan, Jessica F Johnston, Sidney B Cahn, Megan C King, Simon G J Mochrie

Rev Sci Instrum· November 2017

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Promoting convergence: The integrated graduate program in physical and engineering biology at Yale University, a new model for graduate education.
Dorottya B Noble, Simon G J Mochrie, Corey S O'Hern, Thomas D Pollard, Lynne Regan

Biochem Mol Biol Educ· November 2016

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Systems-level approach to uncovering diffusive states and their transitions from single-particle trajectories.
Peter K Koo, Simon G J Mochrie

Phys Rev E· November 2016

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Designed Proteins as Novel Imaging Reagents in Living Escherichia coli.
Susan E Pratt, Elizabeth B Speltz, Simon G J Mochrie, Lynne Regan

Chembiochem· September 2016

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Improved Determination of Subnuclear Position Enabled by Three-Dimensional Membrane Reconstruction.
Yao Zhao, Sarah M Schreiner, Peter K Koo, Paolo Colombi, Megan C King, Simon G J Mochrie

Biophys J· July 2016

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Domain morphology, boundaries, and topological defects in biophotonic gyroid nanostructures of butterfly wing scales.
Andrej Singer, Leandra Boucheron, Sebastian H Dietze, Katharine E Jensen, David Vine, Simon G J Mochrie

Sci Adv· June 2016

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Extracting Diffusive States of Rho GTPase in Live Cells: Towards In Vivo Biochemistry.
Peter K Koo, Matthew Weitzman, Chandran R Sabanaygam, Kenneth L van Golen, Simon G J Mochrie

PLoS Comput Biol· October 2015

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