Publications by authors named "Simon Prochnik"

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Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Strain CCAP19/18.
Juergen E W Polle, Kerrie Barry, John Cushman, Jeremy Schmutz, Duc Tran, Simon Prochnik

Genome Announc· October 2017

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Insights into the red algae and eukaryotic evolution from the genome of (Bangiophyceae, Rhodophyta).
Susan H Brawley, Nicolas A Blouin, Elizabeth Ficko-Blean, Glen L Wheeler, Martin Lohr, Simon E Prochnik

Proc Natl Acad Sci U S A· August 2017

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Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis.
Jay W Kim, Susan H Brawley, Simon Prochnik, Mansi Chovatia, Jane Grimwood

PLoS One· August 2016

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Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity.
Jessen V Bredeson, Jessica B Lyons, Simon E Prochnik, G Albert Wu, Cindy M Ha

Nat Biotechnol· May 2016

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Identification and distribution of the NBS-LRR gene family in the Cassava genome.
Roberto Lozano, Martha T Hamblin, Simon Prochnik, Jean-Luc Jannink

BMC Genomics· May 2015

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The Chlamydomonas genome project: a decade on.
Ian K Blaby, Crysten E Blaby-Haas, Nicolas Tourasse, Erik F Y Hom, David Lopez, Simon Prochnik

Trends Plant Sci· October 2014

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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.
G Albert Wu, Simon Prochnik, Jerry Jenkins, Jerome Salse, Uffe Hellsten

Nat Biotechnol· July 2014

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The Capsella rubella genome and the genomic consequences of rapid mating system evolution.
Tanja Slotte, Khaled M Hazzouri, J Arvid Ågren, Daniel Koenig, Florian Maumus, Simon Prochnik

Nat Genet· July 2013

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The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.

Nat Genet· May 2013

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The Reference Genome of the Halophytic Plant Eutrema salsugineum.
Ruolin Yang, David E Jarvis, Hao Chen, Mark A Beilstein, Jane Grimwood, Simon Prochnik

Front Plant Sci· March 2013

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Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism.
Cheong Xin Chan, Nicolas A Blouin, Yunyun Zhuang, Simone Zäuner, Simon E Prochnik

J Phycol· December 2012

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MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)(1).
John W Stiller, Justin Perry, Linda A Rymarquis, Monica Accerbi, Pamela J Green, Simon Prochnik

J Phycol· August 2012

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Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems.
Cheong Xin Chan, Simone Zäuner, Glen Wheeler, Arthur R Grossman, Simon E Prochnik

Plant Physiol· April 2012

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The Cassava Genome: Current Progress, Future Directions.
Simon Prochnik, Pradeep Reddy Marri, Brian Desany, Pablo D Rabinowicz, Chinnappa Kodira

Trop Plant Biol· March 2012

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The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage.
Steven J Karpowicz, Simon E Prochnik, Arthur R Grossman, Sabeeha S Merchant

J Biol Chem· June 2011

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Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri.
Simon E Prochnik, James Umen, Aurora M Nedelcu, Armin Hallmann, Stephen M Miller

Science· July 2010

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Evolution of an expanded sex-determining locus in Volvox.
Patrick Ferris, Bradley J S C Olson, Peter L De Hoff, Stephen Douglass, David Casero, Simon Prochnik

Science· April 2010

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The genome of Naegleria gruberi illuminates early eukaryotic versatility.
Lillian K Fritz-Laylin, Simon E Prochnik, Michael L Ginger, Joel B Dacks, Meredith L Carpenter

Cell· March 2010

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The dynamic genome of Hydra.
Jarrod A Chapman, Ewen F Kirkness, Oleg Simakov, Steven E Hampson, Therese Mitros, Simon E Prochnik

Nature· March 2010

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The Chlamydomonas genome reveals the evolution of key animal and plant functions.
Sabeeha S Merchant, Simon E Prochnik, Olivier Vallon, Elizabeth H Harris, Steven J Karpowicz

Science· October 2007

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Novel sfi1 alleles uncover additional functions for Sfi1p in bipolar spindle assembly and function.
Victoria E Anderson, John Prudden, Simon Prochnik, Thomas H Giddings, Kevin G Hardwick

Mol Biol Cell· June 2007

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Novel metabolism in Chlamydomonas through the lens of genomics.
Arthur R Grossman, Martin Croft, Vadim N Gladyshev, Sabeeha S Merchant, Matthew C Posewitz, Simon Prochnik

Curr Opin Plant Biol· April 2007

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Evidence for a microRNA expansion in the bilaterian ancestor.
Simon E Prochnik, Daniel S Rokhsar, A Aziz Aboobaker

Dev Genes Evol· January 2007

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Large-scale trends in the evolution of gene structures within 11 animal genomes.
Mark Yandell, Chris J Mungall, Chris Smith, Simon Prochnik, Joshua Kaminker

PLoS Comput Biol· March 2006

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Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.
Sima Misra, Madeline A Crosby, Christopher J Mungall, Beverley B Matthews, Kathryn S Campbell, Simon E Prochnik

Genome Biol· June 2003

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