Publications by authors named "Simon Twigger"

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Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder.
Ryan K C Yuen, Daniele Merico, Matt Bookman, Jennifer L Howe, Bhooma Thiruvahindrapuram, Simon Twigger

Nat Neurosci· April 2017

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InterMOD: integrated data and tools for the unification of model organism research.
Julie Sullivan, Kalpana Karra, Sierra A T Moxon, Andrew Vallejos, Howie Motenko, Simon Twigger

Sci Rep· February 2014

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The Rat Genome Database pathway portal.
Victoria Petri, Mary Shimoyama, G Thomas Hayman, Jennifer R Smith, Marek Tutaj, Simon N Twigger

Database (Oxford)· September 2011

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Using multiple ontologies to integrate complex biological data.
Mary Shimoyama, Victoria Petri, Dean Pasko, Susan Bromberg, Wenhua Wu, Simon Twigger

Comp Funct Genomics· July 2011

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The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.
Stanley J F Laulederkind, Mary Shimoyama, G Thomas Hayman, Timothy F Lowry, Rajni Nigam, Simon N Twigger

Database (Oxford)· May 2011

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The rat genome database curators: who, what, where, why.
Mary Shimoyama, G Thomas Hayman, Stanley J F Laulederkind, Rajni Nigam, Timothy F Lowry, Simon N Twigger

PLoS Comput Biol· November 2009

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Low cost, scalable proteomics data analysis using Amazon's cloud computing services and open source search algorithms.
Brian D Halligan, Joey F Geiger, Andrew K Vallejos, Andrew S Greene, Simon N Twigger

J Proteome Res· June 2009

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The Rat Genome Database 2009: variation, ontologies and pathways.
Melinda R Dwinell, Elizabeth A Worthey, Mary Shimoyama, Burcu Bakir-Gungor, Jeffrey DePons, Simon N Twigger

Nucleic Acids Res· January 2009

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Big data: The future of biocuration.
Doug Howe, Maria Costanzo, Petra Fey, Takashi Gojobori, Linda Hannick, Simon Twigger

Nature· September 2008

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Comparative proteomic analysis of PAI-1 and TNF-alpha-derived endothelial microparticles.
Danielle B Peterson, Tara Sander, Sushma Kaul, Bassam T Wakim, Brian Halligan, Simon Twigger

Proteomics· June 2008

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Interoperability with Moby 1.0--it's better than sharing your toothbrush!

Brief Bioinform· May 2008

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Progress and prospects in rat genetics: a community view.
Timothy J Aitman, John K Critser, Edwin Cuppen, Anna Dominiczak, Xose M Fernandez-Suarez, Simon N Twigger

Nat Genet· May 2008

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What everybody should know about the rat genome and its online resources.
Simon N Twigger, Kim D Pruitt, Xosé M Fernández-Suárez, Donna Karolchik, Kim C Worley

Nat Genet· May 2008

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Protein composition of plasminogen activator inhibitor type 1-derived endothelial microparticles.
Tara L Sander, Jing-Song Ou, John C Densmore, Sushma Kaul, Isaac Matus, Simon Twigger

Shock· April 2008

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The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Nucleic Acids Res· January 2008

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Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics.
George N Phillips, Brian G Fox, John L Markley, Brian F Volkman, Euiyoung Bae, Simon N Twigger

J Struct Funct Genomics· September 2007

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The Rat Genome Database, update 2007--easing the path from disease to data and back again.
Simon N Twigger, Mary Shimoyama, Susan Bromberg, Anne E Kwitek, Howard J Jacob

Nucleic Acids Res· January 2007

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Exploring phenotypic data at the rat genome database.
Simon N Twigger, Jennifer S Smith, Angela Zuniga-Meyer, Susan K Bromberg

Curr Protoc Bioinformatics· July 2006

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PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature.
Danny Yoo, Iris Xu, Tanya Z Berardini, Seung Yon Rhee, Vijay Narayanasamy, Simon Twigger

Curr Protoc Bioinformatics· March 2006

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Tools and strategies for physiological genomics: the Rat Genome Database.
Simon N Twigger, Dean Pasko, Jeff Nie, Mary Shimoyama, Susan Bromberg

Physiol Genomics· October 2005

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A new method for identifying informative genetic markers in selectively bred rats.
David Weinshenker, Malania M Wilson, Katherine M Williams, Jay M Weiss, Neil E Lamb, Simon N Twigger

Mamm Genome· October 2005

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DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.
Brian D Halligan, Victor Ruotti, Simon N Twigger, Andrew S Greene

Nucleic Acids Res· July 2005

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Simultaneous quantification and identification using 18O labeling with an ion trap mass spectrometer and the analysis software application "ZoomQuant".
Wayne A Hicks, Brian D Halligan, Ronit Y Slyper, Simon N Twigger, Andrew S Greene

J Am Soc Mass Spectrom· June 2005

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Using Comparative Genomics to Leverage Animal Models in the Identification of Cancer Genes. Examples in Prostate Cancer.
Milton W Datta, Mark A Suckow, Simon Twigger, Morris Pollard, Howard Jacob

Cancer Genomics Proteomics· May 2005

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ZoomQuant: an application for the quantitation of stable isotope labeled peptides.
Brian D Halligan, Ronit Y Slyper, Simon N Twigger, Wayne Hicks, Michael Olivier

J Am Soc Mass Spectrom· March 2005

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