Publications by authors named "Simone Caccio"

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Host range expansion of asexual parasite can be explained by loss of adaptions in Muller's Ratchet.
Swapnil Tichkule, Cock van Oosterhout, Simone M Cacciò, Filip Weisz, Balu Balan

Nat Commun· December 2025

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Design, development, and testing of a new multi-locus sequence typing scheme for the zoonotic pathogen .
Karin Troell, Christen Rune Stensvold, Anna Rosa Sannella, Martha Betson, Emma Östlund

Curr Res Parasitol Vector Borne Dis· September 2025

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Parapipe: a pipeline for parasite next-generation sequencing data analysis applied to Cryptosporidium.
Arthur V Morris, Guy Robinson, Rachel Chalmers, Simone Cacciò, Thomas Connor

Access Microbiol· September 2025

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Molecular Epidemiology of spp., , and in Guizhou Angus Calves: Dominance of Angus Cattle-Adapted Genotypes and Zoonotic Potential of .
Peixi Qin, Zhuolin Tao, Kaizhi Shi, Jiaxian Zhao, Bingyan Huang

Microorganisms· July 2025

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Detection of parasites in food and water matrices by shotgun metagenomics: A narrative review.
Paolo Vatta, Simone M Cacciò

Food Waterborne Parasitol· June 2025

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Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries.
Elisa Piperni, Long H Nguyen, Paolo Manghi, Hanseul Kim, Edoardo Pasolli

Cell· August 2024

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Comprehensive analysis of flavohemoprotein copy number variation in Giardia intestinalis: exploring links to metronidazole resistance.
Vlasta Korenková, Filip Weisz, Aneta Perglerová, Simone M Cacciò, Eva Nohýnková

Parasit Vectors· August 2024

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Novel strategy to quantify the viability of oocysts of Cryptosporidium parvum and C. hominis, a risk factor of the waterborne protozoan pathogens of public health concern.
Dongqiang Wang, Peng Jiang, Xiaoxuan Yang, Jifei Zhang, Tao Chen

Water Res· July 2024

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Comparative genomics of reveals the emergence of an outbreak-associated population in Europe and its spread to the United States.
Greta Bellinzona, Tiago Nardi, Michele Castelli, Gherard Batisti Biffignandi, Karim Adjou

Genome Res· July 2024

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Mitochondrial genetic diversity and phylogenetic relationships of Echinococcus multilocularis in Europe.
Azzurra Santoro, Federica Santolamazza, Simone M Cacciò, Giuseppe La Rosa, Daniela Antolová

Int J Parasitol· April 2024

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European Union Reference Laboratories support the National food, feed and veterinary Reference Laboratories with rolling out whole genome sequencing in Europe.
Valeria Michelacci, Adrien Asséré, Simone Cacciò, Marina Cavaiuolo, Kirsten Mooijman

Microb Genom· July 2023

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Recent genetic exchanges and admixture shape the genome and population structure of the zoonotic pathogen Cryptosporidium parvum.
Giulia I Corsi, Swapnil Tichkule, Anna Rosa Sannella, Paolo Vatta, Francesco Asnicar

Mol Ecol· May 2023

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Highly contiguous genomes of human clinical isolates of reveal assemblage- and sub-assemblage-specific presence-absence variation in protein-coding genes.
Christian Klotz, Marc William Schmid, Katja Winter, Ralf Ignatius, Filip Weisz

Microb Genom· March 2023

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Extensive testing of a multi-locus sequence typing scheme for Giardia duodenalis assemblage A confirms its good discriminatory power.
Christian Klotz, Anna Rosa Sannella, Filip Weisz, Umer Chaudhry, Jacek Sroka

Parasit Vectors· December 2022

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An outbreak of cryptosporidiosis associated with drinking water in north-eastern Italy, August 2019: microbiological and environmental investigations.
Armando Franceschelli, Lucia Bonadonna, Simone M Cacciò, Anna Rosa Sannella, Christian Cintori

Euro Surveill· September 2022

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VIVID: A Web Application for Variant Interpretation and Visualization in Multi-dimensional Analyses.
Swapnil Tichkule, Yoochan Myung, Myo T Naung, Brendan R E Ansell, Andrew J Guy

Mol Biol Evol· September 2022

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Clustering of Cryptosporidium species infections among sheep and cattle but not children in remote highland communities of Madagascar.
Ralf Krumkamp, Franz J Conraths, Simone Caccio, Gereon Schares, Benedikt Hogan

Parasit Vectors· August 2022

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Global Population Genomics of Two Subspecies of Cryptosporidium hominis during 500 Years of Evolution.
Swapnil Tichkule, Simone M Cacciò, Guy Robinson, Rachel M Chalmers, Ivo Mueller

Mol Biol Evol· April 2022

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Editorial: Enteric Unicellular Eukaryotic Parasites and Gut Microbiota: Mechanisms and Ecology.
Magali Chabé, Gabriela Certad, Simone Mario Caccio

Front Microbiol· October 2021

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Contamination of fresh produce sold on the Italian market with Cyclospora cayetanensis and Echinococcus multilocularis.
Alessandra Barlaam, Tamirat T Temesgen, Kristoffer R Tysnes, Laura Rinaldi, Nicola Ferrari

Food Microbiol· September 2021

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A large outbreak of giardiasis in a municipality of the Bologna province, north-eastern Italy, November 2018 to April 2019.
Davide Resi, Stefania Varani, Anna Rosa Sannella, Alessandra M De Pascali, Margherita Ortalli

Euro Surveill· September 2021

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Mining Public Metagenomes for Environmental Surveillance of Parasites: A Proof of Principle.
Frits F J Franssen, Ingmar Janse, Dennis Janssen, Simone M Caccio, Paolo Vatta

Front Microbiol· June 2021

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Prevalence and genetic characterization of Dientamoeba fragilis in asymptomatic children attending daycare centers.
Ana Paula Oliveira-Arbex, Érica Boarato David, Simone Mario Cacciò, Cátia Regina Branco da Fonseca, Joelma Gonçalves Martin

Rev Inst Med Trop Sao Paulo· May 2021

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Monitoring Campaign over an Edible Dormouse Population (; Rodentia: Gliridae) in Sicily: First Report of Mesocestodiasis.
Giorgia Schirò, Domenico Pieri, Mario Lo Valvo, Luigi Gradoni, Simone Mario Cacciò

Animals (Basel)· March 2021

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Effectiveness of Fenbendazole and Metronidazole Against Infection in Dogs Monitored for 50-Days in Home-Conditions.
Lavinia Ciuca, Paola Pepe, Antonio Bosco, Simone Mario Caccio, Maria Paola Maurelli

Front Vet Sci· March 2021

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