Publications by authors named "Simone Zuffa"

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Gut microbiota and derived metabolites mediate obstructive sleep apnea induced atherosclerosis.
Jin Xue, Celeste Allaband, Simone Zuffa, Orit Poulsen, Jason Meadows

Gut Microbes· December 2025

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Environmental and maternal imprints on infant gut metabolic development.
Kine Eide Kvitne, Celeste Allaband, Jennifer C Onuora, Daniela Perry, Simone Zuffa

Cell Host Microbe· December 2025

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The undiscovered natural product potential of Actinomycetes.
Andrés M Caraballo-Rodríguez, Andrés Cumsille, Sarolt Magyari, Maria Taboada-Alquerque, Bahar Behsaz, Simone Zuffa

J Antibiot (Tokyo)· December 2025

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Microbiome-derived bile acid signatures in early life and their association with islet autoimmunity.
Santosh Lamichhane, Alex M Dickens, Tanja Buchacher, Tianai Lou, Vincent Charron-Lamoureux, Simone Zuffa

Nat Commun· December 2025

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A resource to empirically establish drug exposure records directly from untargeted metabolomics data.
Haoqi Nina Zhao, Kine Eide Kvitne, Corinna Brungs, Siddharth Mohan, Vincent Charron-Lamoureux, Simone Zuffa

Nat Commun· December 2025

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Effect of Perinatal Ampicillin or Amoxicillin/Clavulanate Exposure on Maternal and Infant Gut Microbiome, Metabolome, and Infant Responses to the 20-valent Pneumococcal Conjugate Vaccine.
Emi Suzuki, Victoria Deleray, Jasmine Zemlin, Armin Kousha, Hannah Nonoguchi, Simone Zuffa

bioRxiv· December 2025

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Charting the Undiscovered Metabolome with Synthetic Multiplexing.
Abubaker Patan, Shipei Xing, Vincent Charron-Lamoureux, Zhewen Hu, Victoria Deleray, Simone Zuffa

bioRxiv· November 2025

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Targeted Microbial Shifts and Metabolite Profiles Were Associated with Clinical Response to an Anti-Inflammatory Diet in Osteoarthritis.
Marta Sala-Climent, Kevin Bu, Roxana Coras, Martha Cedeno, Simone Zuffa

Nutrients· August 2025

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Environmental and Maternal Imprints on Infant Gut Metabolic Programming.
Kine Eide Kvitne, Celeste Allaband, Jennifer C Onuora, Daniela Perry, Simone Zuffa

bioRxiv· July 2025

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Influence of perinatal ampicillin exposure on maternal fecal microbial and metabolic profiles.
Simone Zuffa, Sydney P Thomas, Ipsita Mohanty, Yasin El Abiead, Victoria Deleray

bioRxiv· June 2025

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Milk phospholipid-coated lipid droplets modulate the infant gut microbiota and metabolome influencing weight gain.
Simone Zuffa, Christophe Lay, Elizabeth A Wimborne, Arabella Hornung Rodriguez, Yi Wu

Microbiome· May 2025

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Enabling pan-repository reanalysis for big data science of public metabolomics data.
Yasin El Abiead, Michael Strobel, Thomas Payne, Eoin Fahy, Claire O'Donovan, Simone Zuffa

Nat Commun· May 2025

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To Impute or Not To Impute in Untargeted Metabolomics─That is the Compositional Question.
Dennis D Krutkin, Sydney Thomas, Simone Zuffa, Prajit Rajkumar, Rob Knight

J Am Soc Mass Spectrom· April 2025

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The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns.
Rodolfo A Salido, Haoqi Nina Zhao, Daniel McDonald, Helena Mannochio-Russo, Simone Zuffa

Cell· April 2025

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Human Untargeted Metabolomics in High-Throughput Gut Microbiome Research: Ethanol vs Methanol.
Simone Zuffa, Vincent Charron-Lamoureux, Caitriona Brennan, Madison Ambre, Rob Knight

Anal Chem· March 2025

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Discovery of metabolites prevails amid in-source fragmentation.
Yasin El Abiead, Adriano Rutz, Simone Zuffa, Bashar Amer, Shipei Xing

Nat Metab· March 2025

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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data.
Abzer K Pakkir Shah, Axel Walter, Filip Ottosson, Francesco Russo, Marcelo Navarro-Diaz, Simone Zuffa

Nat Protoc· January 2025

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Gut Microbiota and Derived Metabolites Mediate Obstructive Sleep Apnea Induced Atherosclerosis.
Jin Xue, Celeste Allaband, Simone Zuffa, Orit Poulsen, Jason Meadows

bioRxiv· November 2024

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Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies.
Caitriona Brennan, Pedro Belda-Ferre, Simone Zuffa, Vincent Charron-Lamoureux, Ipsita Mohanty

mSystems· October 2024

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Empirically establishing drug exposure records directly from untargeted metabolomics data.
Haoqi Nina Zhao, Kine Eide Kvitne, Corinna Brungs, Siddharth Mohan, Vincent Charron-Lamoureux, Simone Zuffa

bioRxiv· October 2024

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Receptor and metabolic insights on the ability of caffeine to prevent alcohol-induced stimulation of mesolimbic dopamine transmission.
Valentina Bassareo, Riccardo Maccioni, Giuseppe Talani, Simone Zuffa, Yasin El Abiead

Transl Psychiatry· September 2024

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Dietary iron intake has long-term effects on the fecal metabolome and microbiome.
Anastasiia Kostenko, Simone Zuffa, Hui Zhi, Kevin Mildau, Manuela Raffatellu

Metallomics· July 2024

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Receptor and metabolic insights on the ability of caffeine to prevent alcohol-induced stimulation of mesolimbic dopamine transmission.
Riccardo Maccioni, Valentina Bassareo, Giuseppe Talani, Simone Zuffa, Yasin El Abiead

Res Sq· June 2024

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Pathogenic strains can emerge from gut-resident commensals.
Renee E Oles, Marvic Carrillo Terrazas, Luke R Loomis, Maxwell J Neal, Mousumi Paulchakrabarti, Simone Zuffa

bioRxiv· June 2024

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plantMASST - Community-driven chemotaxonomic digitization of plants.
Paulo Wender P Gomes, Helena Mannochio-Russo, Robin Schmid, Simone Zuffa, Tito Damiani

bioRxiv· May 2024

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