Publications by authors named "Sivan Bercovici"

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In-matrix library preparation for metagenomic sequencing of microbial cell-free DNA.
Paul L Babb, Jamilla Akhund-Zade, Damek Spacek, Kevin Brick, Fred C Christians, Sivan Bercovici

J Clin Microbiol· December 2025

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Infectious disease surveillance and management in clinical xenotransplantation: Experience with the first human porcine kidney transplant.
Jay A Fishman, Joseph El Khoury, Tatsuo Kawai, Leonardo V Riella, Nahel Elias, Sivan Bercovici

Am J Transplant· November 2025

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Fatal Borealpox in an Immunosuppressed Patient Treated With Antivirals and Vaccinia Immunoglobulin-Alaska, 2023.
Julia H Rogers, Benjamin Westley, Thomas Mego, Katherine G Newell, John Laurance, Sivan Bercovici

Clin Infect Dis· June 2025

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Plasma Microbial Cell-free DNA Sequencing for Diagnosis of Pediatric Lyme Disease.
Andrew S Handel, Asim A Ahmed, Shivkumar Venkatasubrahmanyam, Sivan Bercovici, Qing Mao

Pediatr Infect Dis J· May 2025

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Analytical and clinical validation of direct detection of antimicrobial resistance markers by plasma microbial cell-free DNA sequencing.
Fred C Christians, Jamilla Akhund-Zade, Kristin Jarman, Shivkumar Venkatasubrahmanyam, Nicholas Noll, Sivan Bercovici

J Clin Microbiol· October 2024

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Clinical Utility of Plasma Microbial Cell-Free DNA Sequencing Among Immunocompromised Patients With Pneumonia.
Deng B Madut, Roy F Chemaly, Sanjeet S Dadwal, Joshua A Hill, Yeon Joo Lee, Sivan Bercovici

Open Forum Infect Dis· August 2024

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Plasma Microbial Cell-Free DNA Sequencing in Immunocompromised Patients With Pneumonia: A Prospective Observational Study.
Stephen P Bergin, Roy F Chemaly, Sanjeet S Dadwal, Joshua A Hill, Yeon Joo Lee, Sivan Bercovici

Clin Infect Dis· March 2024

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Detection of Mpox Virus Using Microbial Cell-Free DNA: The Potential of Pathogen-Agnostic Sequencing for Rapid Identification of Emerging Pathogens.
Sarah Y Park, Martin S Lindner, Kevin Brick, Nicholas Noll, Rachid Ounit, Sivan Bercovici

J Infect Dis· March 2024

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Circulating microbial cell-free DNA is increased during neutropenia after hematopoietic stem cell transplantation.
Lily M Blair, Jamilla Akhund-Zade, Zoe A Katsamakis, Olivia C Smibert, Alex E Wolfe, Sivan Bercovici

Blood Adv· November 2023

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Noninvasive diagnosis of secondary infections in COVID-19 by sequencing of plasma microbial cell-free DNA.
Grace Lisius, Radha Duttagupta, Asim A Ahmed, Matthew Hensley, Nameer Al-Yousif, Sivan Bercovici

iScience· November 2023

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Plasma Microbial Cell-Free DNA Sequencing from over 15,000 Patients Identified a Broad Spectrum of Pathogens.
Sarah Y Park, Eliza J Chang, Nathan Ledeboer, Kevin Messacar, Martin S Lindner, Sivan Bercovici

J Clin Microbiol· August 2023

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Circulating microbial cell-free DNA is associated with inflammatory host-responses in severe pneumonia.
Haopu Yang, Ghady Haidar, Nameer S Al-Yousif, Haris Zia, Daniel Kotok, Sivan Bercovici

Thorax· December 2021

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Detection of Borrelia burgdorferi Cell-free DNA in Human Plasma Samples for Improved Diagnosis of Early Lyme Borreliosis.
John A Branda, Jacob E Lemieux, Lily Blair, Asim A Ahmed, David K Hong, Sivan Bercovici

Clin Infect Dis· October 2021

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Detection of microbial cell-free DNA in maternal and umbilical cord plasma in patients with chorioamnionitis using next generation sequencing.
Russell G Witt, Lily Blair, Michela Frascoli, Michael J Rosen, Quoc-Hung Nguyen, Sivan Bercovici

PLoS One· July 2020

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Rapid detection of invasive Mycobacterium chimaera disease via a novel plasma-based next-generation sequencing test.
Jim Nomura, Gunter Rieg, Gary Bluestone, Townson Tsai, Andrew Lai, Sivan Bercovici

BMC Infect Dis· May 2019

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Analytical and clinical validation of a microbial cell-free DNA sequencing test for infectious disease.
Timothy A Blauwkamp, Simone Thair, Michael J Rosen, Lily Blair, Martin S Lindner, Sivan Bercovici

Nat Microbiol· April 2019

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Plasma Cell-Free DNA Next-Generation Sequencing to Diagnose and Monitor Infections in Allogeneic Hematopoietic Stem Cell Transplant Patients.
Monica Fung, Simona Zompi, Hon Seng, Desiree Hollemon, Adama Parham, Sivan Bercovici

Open Forum Infect Dis· December 2018

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Liquid biopsy for infectious diseases: sequencing of cell-free plasma to detect pathogen DNA in patients with invasive fungal disease.
David K Hong, Timothy A Blauwkamp, Mickey Kertesz, Sivan Bercovici, Cynthia Truong

Diagn Microbiol Infect Dis· November 2018

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Reveel: large-scale population genotyping using low-coverage sequencing data.
Lin Huang, Bo Wang, Ruitang Chen, Sivan Bercovici, Serafim Batzoglou

Bioinformatics· June 2016

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Parente2: a fast and accurate method for detecting identity by descent.
Jesse M Rodriguez, Sivan Bercovici, Lin Huang, Roy Frostig, Serafim Batzoglou

Genome Res· February 2015

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An effective filter for IBD detection in large data sets.
Lin Huang, Sivan Bercovici, Jesse M Rodriguez, Serafim Batzoglou

PLoS One· December 2014

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Ancestry inference in complex admixtures via variable-length Markov chain linkage models.
Jesse M Rodriguez, Sivan Bercovici, Megan Elmore, Serafim Batzoglou

J Comput Biol· March 2013

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The implications of ENCODE for diagnostics.
Eugene Fratkin, Sivan Bercovici, Dietrich A Stephan

Nat Biotechnol· November 2012

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Population-specific association between a polymorphic variant in ST18, encoding a pro-apoptotic molecule, and pemphigus vulgaris.
Ofer Sarig, Sivan Bercovici, Lilach Zoller, Ilan Goldberg, Margarita Indelman

J Invest Dermatol· July 2012

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Reconstruction of genealogical relationships with applications to Phase III of HapMap.
Sofia Kyriazopoulou-Panagiotopoulou, Dorna Kashef Haghighi, Sarah J Aerni, Andreas Sundquist, Sivan Bercovici

Bioinformatics· July 2011

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