Publications by authors named "Siyuan Cheng"

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Benchmark for simple and complex genome inversions.
Siyuan Cheng, Fritz J Sedlazeck

bioRxiv· December 2025

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Application of Pichia kudriavzevii in solid-state fermentation of Zhenjiang aromatic vinegar: Microbial community structure and volatile flavor changes.
Shengkai Hua, Xiang Wei, Leyi Wang, Yuqin Wang, Siyuan Cheng

Int J Food Microbiol· November 2025

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Human CD4 T cells are a functional target for lipid nanoparticle-based mRNA vaccines.
Samuel C Kim, Jiin Felgner, Mariella S Soto, Lauren Hitchcock, Emily K Silzel, Siyuan Cheng

mBio· November 2025

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Dynamic patterns of depression and their association with stroke: insights from CHARLS, ELSA, and HRS.
Zongren Zhao, Siyuan Cheng, Shun Li

Int J Surg· November 2025

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Constellation illuminates rare disease genetics.
Siyuan Cheng, Qing Zhang, Xinchang Zheng, Shalini Jhangiani, Jacqueline C Weir

medRxiv· November 2025

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Assessing outer retinal and choroidal changes in scd: potential for high-risk screening using SS-OCTA.
Rong Gao, Suyun Rao, Siyuan Cheng, Zhenxiang Gong, Bitao Bu

Transl Psychiatry· November 2025

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ATHENA: A deep learning-based AI for functional prediction of genomic mutations and synergistic vulnerabilities in prostate cancer.
Siyuan Cheng, Xiao Jin, Jiaying Qian, Yuyin Jiang, Isaac Yi Kim

bioRxiv· November 2025

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Graded Notch Signaling Functions as a Rheostat of Lineage Plasticity and Therapy Resistance in Prostate Cancer.
Yuyin Jiang, Siyuan Cheng, Catherine Yijia Zhang, Xiao Jin, Longjun Li

bioRxiv· November 2025

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Artificial intelligence in forensic pathology: Multi-organ postmortem pathomics for estimating postmortem interval.
Guoshuai An, Yu Gao, Siyuan Cheng, Na Li, Kang Ren

Comput Methods Programs Biomed· October 2025

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Adsorption of Radioiodine Species by a Microporous Rare-Earth-Organic Framework.
Siyuan Cheng, Tingrui Xu, Junfeng Qian, Huangjie Lu, Zhi-Hui Zhang

Inorg Chem· October 2025

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Targeting Smad3 Phosphorylation Attenuates Anastomotic Intimal Hyperplasia and Perigraft Fibrosis in Decellularized Tissue-Engineered Vascular Grafts.
Peng Lu, Tun Wang, Sheng Liao, Zhenyu He, Siyuan Cheng, Zibo Cheng

Biomater Res· October 2025

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Development of atomic-scale thin-film deposition system for perpendicular magnetic tunnel junctions with high tunneling magnetoresistance.
Siyuan Cheng, Houyi Cheng, Yuxuan Yao, Sylvain Eimer, Boyu Zhang

Rev Sci Instrum· October 2025

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RUNX1T1-HDAC Reprogramming of the HOX Code Signaling Drives a Targetable Pan-Cancer Lineage Plasticity.
Yuyin Jiang, Siyuan Cheng, Catherine Yijia Zhang, Xiao Jin, Yaru Xu

bioRxiv· October 2025

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Association between fibrinogen-to-albumin ratio and all-cause mortality in critically ill patients with atrial fibrillation: a retrospective study using the MIMIC-IV database.
Yuchen Han, Shiyun Jiang, Siyuan Cheng, Lishuai Zhang

Eur J Med Res· August 2025

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Evolving role of deubiquitinating enzymes in oral cancer (Review).
Zidi Wang, Siyuan Cheng, Jianhui Wei, Jiandong Hu, Fenge Li

Oncol Lett· July 2025

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Preparation of Active On-Demand Antibacterial Hydrogel Epidermis Electrodes Based on Flora Balance Strategy for Intelligent Prostheses.
Yifei Sun, Mingxuan Xiao, Zhenxuan Tang, Haibo Wu, Siyuan Cheng

ACS Appl Mater Interfaces· June 2025

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Biovegan Leather Sensor: A Mycelium Functionalized Material for Electrophysiological Signal Monitoring.
Rui Zhang, Siyuan Cheng, Zaifeng Pan, Fenghui Yang, Yunqing Liu

ACS Appl Mater Interfaces· June 2025

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PROX1 is an early driver of lineage plasticity in prostate cancer.
Zhi Duan, Mingchen Shi, Anbarasu Kumaraswamy, Dong Lin, Dhruv Khokhani, Siyuan Cheng

J Clin Invest· June 2025

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Approach to Chelating Radioactivity using Carbon Dots for Positron Emission Tomography Imaging.
Son Long Ho, Xinrui Ma, Colin M Basham, Weiling Zhao, Siyuan Cheng

ACS Appl Mater Interfaces· June 2025

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Highly Sensitive Dissolved Oxygen Sensor with High Stability in Seawater Based on Silica-Encapsulated Platinum(II) Porphyrin.
Hang Lv, Siyuan Cheng, Song Hu, Guohong Zhou

Sensors (Basel)· June 2025

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Comparison of immune checkpoint inhibitors in combination with chemotherapy versus chemotherapy alone in the first-line treatment of advanced gastric cancer patients with low PD-L1 expression: a systematic review and meta-analysis.
Yuxin Wang, Tong Xie, Shuai Xiang, Cheng Liu, Siyuan Cheng

Ther Adv Med Oncol· May 2025

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Notch as a Driver of Lineage Plasticity and Therapeutic Target in Enzalutamide-Resistant Prostate Cancer.
Yuyin Jiang, Siyuan Cheng, Longjun Li, Melanie Fraidenburg, Isaac Yi Kim

bioRxiv· May 2025

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Pan-cancer Analysis Identified Ectopic RUNX1T1 Associated with Lineage Plasticity.
Yuyin Jiang, Siyuan Cheng, Isaac Yi Kim, Su Deng, Ping Mu

bioRxiv· April 2025

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Wnt/Beta-Catenin Signaling Is Active in Neuroendocrine Prostate Cancer.
Yingli Shi, Shu Yang, Lin Li, Siyuan Cheng, Jeyaluxmy Sivalingam

bioRxiv· March 2025

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The p53-miR17 family-Rankl axis bridges liver-bone communication.
Guixing Ma, Siyuan Cheng, Yingying Han, Wanze Tang, Wei Pang

Mol Ther· February 2025

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