Publications by authors named "Sohrab Shah"

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Determinants of sensitivity to HER2-targeted antibody drug conjugates in urothelial cancer.
Ziyu Chen, Xinran Tang, Jordan E Eichholz, Andrew Mcpherson, Jasmine Thomas, Sohrab P Shah

Nat Commun· December 2025

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Tracking clonal evolution during treatment in ovarian cancer using cell-free DNA.
Marc J Williams, Ignacio Vázquez-García, Grittney Tam, Michelle Wu, Nancy Varice, Ronak H Shah, Sohrab P Shah

Nature· November 2025

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Enabling whole genome sequencing analysis from FFPE specimens in clinical oncology.
Dylan Domenico, Gunes Gundem, Max F Levine, Juan Esteban Arango-Ossa, Pauline Robbe, Sohrab P Shah

Nat Commun· November 2025

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Ongoing genome doubling shapes evolvability and immunity in ovarian cancer.
Andrew McPherson, Ignacio Vázquez-García, Matthew A Myers, Duaa H Al-Rawi, Matthew Zatzman, Sohrab P Shah

Nature· August 2025

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Inferring Phenotypes of Copy Number Clones in Cancer Populations Using TreeAlign.
Hongyu Shi, Matthew Zatzman, Sohrab Shah, Andrew McPherson

Methods Mol Biol· August 2025

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Integrated histopathologic modeling of detailed tumor subtypes and actionable biomarkers.
Kevin M Boehm, Madison Darmofal, Arfath Pasha, Andrew Aukerman, Raymond Lim, Sohrab P Shah

bioRxiv· August 2025

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FOXA2 promotes metastatic competence in small cell lung cancer.
Kenta Kawasaki, Sohrab Salehi, Yingqian A Zhan, Kevin Chen, Jun Ho Lee, Neil J Shah, Sohrab P Shah

Nat Commun· May 2025

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Disrupted priming within draining lymph nodes drives immune quiescence in gastric cancer.
Sohrab Salehi, Emily E Stroobant, Hannah Lees, Ya-Hui Lin, Shoji Shimada, Sohrab P Shah

bioRxiv· May 2025

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Complementary modes of resistance to TKI in lung adenocarcinoma through MAPK activation and cellular plasticity.
Matthew Zatzman, Alvaro Quintanal-Villalonga, Sohrab Salehi, Nicholas Ceglia, Jake June-Koo Lee, Sohrab P Shah

bioRxiv· May 2025

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Host Tissue Factors Predict Immune Surveillance and Therapeutic Outcomes in Gastric Cancer.
Miseker Abate, Emily E Stroobant, Teng Fei, Ya-Hui Lin, Shoji Shimada, Sohrab P Shah

Cancer Immunol Res· April 2025

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The dynamic immune behavior of primary and metastatic ovarian carcinoma.
Elaine Stur, Fuduan Peng, Pang-Ning Teng, Emine Bayraktar, Min Hu, Sohrab P Shah

NPJ Precis Oncol· April 2025

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Multimodal histopathologic models stratify hormone receptor-positive early breast cancer.
Kevin M Boehm, Omar S M El Nahhas, Antonio Marra, Michele Waters, Justin Jee, Sohrab P Shah

Nat Commun· March 2025

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Inferring active mutational processes in cancer using single cell sequencing and evolutionary constraints.
Gryte Satas, Matthew A Myers, Andrew McPherson, Sohrab P Shah

bioRxiv· February 2025

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Disappearing Signet Ring Cell Adenocarcinoma in Gastric Cancer Patients.
Aravind Sreeram, Emily E Stroobant, Monika Laszkowska, Parry Guilford, Shoji Shimada, Sohrab Shah

Ann Surg Oncol· December 2024

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Automated real-world data integration improves cancer outcome prediction.
Justin Jee, Christopher Fong, Karl Pichotta, Thinh Ngoc Tran, Anisha Luthra, Sohrab P Shah

Nature· December 2024

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Luminal breast epithelial cells of BRCA1 or BRCA2 mutation carriers and noncarriers harbor common breast cancer copy number alterations.
Marc J Williams, Michael U J Oliphant, Vinci Au, Cathy Liu, Caroline Baril, Sohrab P Shah

Nat Genet· December 2024

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Inferring replication timing and proliferation dynamics from single-cell DNA sequencing data.
Adam C Weiner, Marc J Williams, Hongyu Shi, Ignacio Vázquez-García, Sohrab Salehi, Sohrab P Shah

Nat Commun· October 2024

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Multiplexed Spatial Profiling of Hodgkin Reed-Sternberg Cell Neighborhoods in Classic Hodgkin Lymphoma.
Maryam Pourmaleki, Caitlin J Jones, Sabrina D Mellinghoff, Brian D Greenstein, Priyadarshini Kumar, Sohrab P Shah

Clin Cancer Res· September 2024

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DNA liquid biopsy-based prediction of cancer-associated venous thromboembolism.
Justin Jee, A Rose Brannon, Rohan Singh, Andriy Derkach, Christopher Fong, Sohrab P Shah

Nat Med· September 2024

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Tracking clonal evolution of drug resistance in ovarian cancer patients by exploiting structural variants in cfDNA.
Marc J Williams, Ignacio Vázquez-García, Grittney Tam, Michelle Wu, Nancy Varice, Ronak H Shah, Sohrab P Shah

bioRxiv· August 2024

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Tumor suppressor heterozygosity and homologous recombination deficiency mediate resistance to front-line therapy in breast cancer.
Anton Safonov, Antonio Marra, Chaitanya Bandlamudi, Ben O'Leary, Bradley Wubbenhorst, Sohrab Shah

bioRxiv· August 2024

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Single-cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancers.
Farhia Kabeer, Hoa Tran, Mirela Andronescu, Gurdeep Singh, Hakwoo Lee, Sohrab P Shah

Genome Biol· July 2024

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Ongoing genome doubling promotes evolvability and immune dysregulation in ovarian cancer.
Andrew McPherson, Ignacio Vázquez-García, Matthew A Myers, Matthew Zatzman, Duaa Al-Rawi, Sohrab P Shah

bioRxiv· July 2024

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Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes.
Minsoo Kim, Alexander N Gorelick, Ignacio Vàzquez-García, Marc J Williams, Sohrab Salehi, Sohrab P Shah

Nat Genet· May 2024

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Luminal breast epithelial cells from wildtype and mutation carriers harbor copy number alterations commonly associated with breast cancer.
Marc J Williams, Michael Uj Oliphant, Vinci Au, Cathy Liu, Caroline Baril, Sohrab P Shah

bioRxiv· May 2024

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