Publications by authors named "Somnath Tagore"

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Cellular states associated with metastatic organotropism and survival in patients with pancreatic ductal adenocarcinoma.
Morteza Chalabi Hajkarim, Michael May, Amit Dipak Amin, Jacob Jamison, Somnath Tagore

Nat Genet· November 2025

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The SWI/SNF PBAF complex facilitates REST occupancy at repressive chromatin.
Elena Grossi, Christie B Nguyen, Saul Carcamo, Valentina Kirigin Callaú, Shannon Moran, Somnath Tagore

Mol Cell· May 2025

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Chromosomal instability shapes the tumor microenvironment of esophageal adenocarcinoma via a cGAS-chemokine-myeloid axis.
Bruno Beernaert, Rose L Jady-Clark, Parin Shah, Erik Ramon-Gil, Nora M Lawson, Somnath Tagore

bioRxiv· May 2025

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Single-cell and spatial genomic landscape of non-small cell lung cancer brain metastases.
Somnath Tagore, Lindsay Caprio, Amit Dipak Amin, Kresimir Bestak, Karan Luthria

Nat Med· April 2025

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Single-Cell Profiling of Sarcomas from Archival Tissue Reveals Programs Associated with Resistance to Immune Checkpoint Blockade.
Karan Luthria, Parin Shah, Blake Caldwell, Johannes C Melms, Sinan Abuzaid, Somnath Tagore

Clin Cancer Res· October 2024

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Loss of Pip4k2c confers liver-metastatic organotropism through insulin-dependent PI3K-AKT pathway activation.
Meri Rogava, Tyler J Aprati, Wei-Yu Chi, Johannes C Melms, Clemens Hug, Somnath Tagore

Nat Cancer· March 2024

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KLRG1 marks tumor-infiltrating CD4 T cell subsets associated with tumor progression and immunotherapy response.
Casey R Ager, Mingxuan Zhang, Matthew Chaimowitz, Shruti Bansal, Somnath Tagore

J Immunother Cancer· September 2023

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Systematic Pan-cancer Functional Inference and Validation of Hyper, Hypo and Neomorphic Mutations.
Somnath Tagore, Samuel Tsang, Gordon B Mills, Andrea Califano

bioRxiv· May 2023

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Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens.
Yiping Wang, Joy Linyue Fan, Johannes C Melms, Amit Dipak Amin, Yohanna Georgis, Somnath Tagore

Nat Genet· January 2023

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tRNA methylation resolves codon usage bias at the limit of cell viability.
Isao Masuda, Yuka Yamaki, Rajesh Detroja, Somnath Tagore, Henry Moore

Cell Rep· October 2022

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Dissecting the treatment-naive ecosystem of human melanoma brain metastasis.
Jana Biermann, Johannes C Melms, Amit Dipak Amin, Yiping Wang, Lindsay A Caprio, Somnath Tagore

Cell· July 2022

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A multi-organ chip with matured tissue niches linked by vascular flow.
Kacey Ronaldson-Bouchard, Diogo Teles, Keith Yeager, Daniel Naveed Tavakol, Yimu Zhao, Somnath Tagore

Nat Biomed Eng· April 2022

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Author Correction: A molecular single-cell lung atlas of lethal COVID-19.
Johannes C Melms, Jana Biermann, Huachao Huang, Yiping Wang, Ajay Nair, Somnath Tagore

Nature· October 2021

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A molecular single-cell lung atlas of lethal COVID-19.
Johannes C Melms, Jana Biermann, Huachao Huang, Yiping Wang, Ajay Nair, Somnath Tagore

Nature· July 2021

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ASAPP: Architectural Similarity-Based Automated Pathway Prediction System and Its Application in Host-Pathogen Interactions.
Rishika Sen, Somnath Tagore, Rajat K De

IEEE/ACM Trans Comput Biol Bioinform· February 2021

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Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses.
Joshua Broyde, David R Simpson, Diana Murray, Evan O Paull, Brennan W Chu, Somnath Tagore

Nat Biotechnol· February 2021

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A modular master regulator landscape controls cancer transcriptional identity.
Evan O Paull, Alvaro Aytes, Sunny J Jones, Prem S Subramaniam, Federico M Giorgi, Somnath Tagore

Cell· January 2021

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Design principles of gene evolution for niche adaptation through changes in protein-protein interaction networks.
Gon Carmi, Somnath Tagore, Alessandro Gorohovski, Aviad Sivan, Dorith Raviv-Shay

Sci Rep· September 2020

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Cluster Quality based Non-Reductional (CQNR) oversampling technique and effector protein predictor based on 3D structure (EPP3D) of proteins.
Rishika Sen, Somnath Tagore, Rajat K De

Comput Biol Med· September 2019

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ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins.
Somnath Tagore, Alessandro Gorohovski, Lars Juhl Jensen, Milana Frenkel-Morgenstern

PLoS Comput Biol· August 2019

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Adaptive Transcriptome Profiling of Subterranean Zokor, Myospalax baileyi, to High- Altitude Stresses in Tibet.
Zhenyuan Cai, Liuyang Wang, Xiaoying Song, Somnath Tagore, Xiangfeng Li

Sci Rep· March 2018

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ChiPPI: a novel method for mapping chimeric protein-protein interactions uncovers selection principles of protein fusion events in cancer.
Milana Frenkel-Morgenstern, Alessandro Gorohovski, Somnath Tagore, Vaishnovi Sekar, Miguel Vazquez

Nucleic Acids Res· July 2017

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ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions.
Alessandro Gorohovski, Somnath Tagore, Vikrant Palande, Assaf Malka, Dorith Raviv-Shay

Nucleic Acids Res· January 2017

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Evolutionary growth of certain metabolic pathways involved in the functioning of GAD and INS genes in Type 1 Diabetes Mellitus: Their architecture and stability.
Somnath Tagore, Rajat K De

Comput Biol Med· June 2015

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Analyzing methods for path mining with applications in metabolomics.
Somnath Tagore, Nirmalya Chowdhury, Rajat K De

Gene· January 2014

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