Publications by authors named "Soren Alexandersen"

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The dynamics of single stranded, positive sense RNA bacteriophages in the rumen virome.
Soren Alexandersen, Isabella Polanco, Samantha Joan Noel, Mirka Thorsteinsson, Maria H Kjeldsen

Sci Rep· November 2025

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Beak and feather disease virus (BFDV) persists in tissues of asymptomatic wild Crimson Rosellas.
Berta Blanch-Lázaro, Anthony Chamings, Raoul F H Ribot, Tarka Raj Bhatta, Mathew L Berg, Soren Alexandersen

Commun Biol· September 2024

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Variations in the persistence of 5'-end genomic and subgenomic SARS-CoV-2 RNAs in wastewater from aircraft, airports and wastewater treatment plants.
Man-Hung Eric Tang, Marc Bennedbaek, Vithiagaran Gunalan, Amanda Gammelby Qvesel, Theis Hass Thorsen, Soren Alexandersen

Heliyon· May 2024

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Comparative subgenomic mRNA profiles of SARS-CoV-2 Alpha, Delta and Omicron BA.1, BA.2 and BA.5 sub-lineages using Danish COVID-19 genomic surveillance data.
Man-Hung Eric Tang, Kim Lee Ng, Sofie Marie Edslev, Kirsten Ellegaard, , Soren Alexandersen

EBioMedicine· July 2023

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Novel Human Parechovirus 3 Diversity, Recombination, and Clinical Impact Across 7 Years: An Australian Story.
Seweryn Bialasiewicz, Meryta May, Sarah Tozer, Rebecca Day, Anne Bernard, Soren Alexandersen

J Infect Dis· January 2023

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Severe Human Case of Zoonotic Infection with Swine-Origin Influenza A Virus, Denmark, 2021.
Klara M Andersen, Lasse S Vestergaard, Jakob N Nissen, Sophie J George, Pia Ryt-Hansen, Søren Alexandersen

Emerg Infect Dis· December 2022

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Neonatal parechovirus infection: Possibility of in-utero transmission.
Adelene Hilbig, Kwee C Liew, Claire Foster, David G Fuller, Anthony Chamings, Soren Alexandersen

J Paediatr Child Health· June 2022

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Ability to detect antibodies to beak and feather disease virus in blood on filter paper decreases with duration of storage.
Berta Blanch-Lázaro, Raoul F H Ribot, Mathew L Berg, Soren Alexandersen, Andrew T D Bennett

PeerJ· December 2021

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Diverse Bacterial Resistance Genes Detected in Fecal Samples From Clinically Healthy Women and Infants in Australia-A Descriptive Pilot Study.
Vanina Guernier-Cambert, Anthony Chamings, Fiona Collier, Soren Alexandersen

Front Microbiol· September 2021

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Exploring the Cause of Diarrhoea and Poor Growth in 8-11-Week-Old Pigs from an Australian Pig Herd Using Metagenomic Sequencing.
Tarka Raj Bhatta, Anthony Chamings, Soren Alexandersen

Viruses· August 2021

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Metagenomic characterisation of additional and novel avian viruses from Australian wild ducks.
Jessy Vibin, Anthony Chamings, Marcel Klaassen, Soren Alexandersen

Sci Rep· December 2020

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SARS-CoV-2 genomic and subgenomic RNAs in diagnostic samples are not an indicator of active replication.
Soren Alexandersen, Anthony Chamings, Tarka Raj Bhatta

Nat Commun· November 2020

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Infection Dynamics of Swine Influenza Virus in a Danish Pig Herd Reveals Recurrent Infections with Different Variants of the H1N2 Swine Influenza A Virus Subtype.
Tarka Raj Bhatta, Pia Ryt-Hansen, Jens Peter Nielsen, Lars Erik Larsen, Inge Larsen, Soren Alexandersen

Viruses· September 2020

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Metagenomic characterisation of avian parvoviruses and picornaviruses from Australian wild ducks.
Jessy Vibin, Anthony Chamings, Marcel Klaassen, Tarka Raj Bhatta, Soren Alexandersen

Sci Rep· July 2020

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Epidemic and Inter-epidemic Burden of Pediatric Human Parechovirus Infection in New South Wales, Australia, 2017-2018.
Ameneh Khatami, Rebecca Burrell, Brendan J McMullan, William Rawlinson, Rodney C Givney, Soren Alexandersen

Pediatr Infect Dis J· June 2020

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Detection of a Reassortant H9N2 Avian Influenza Virus with Intercontinental Gene Segments in a Resident Australian Chestnut Teal.
Tarka Raj Bhatta, Anthony Chamings, Jessy Vibin, Marcel Klaassen, Soren Alexandersen

Viruses· January 2020

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An Emerging Human Parechovirus Type 5 Causing Sepsis-Like Illness in Infants in Australia.
Anthony Chamings, Kwee Chin Liew, Emily Reid, Eugene Athan, Amy Raditsis, Soren Alexandersen

Viruses· October 2019

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Evolutionary analysis of human parechovirus type 3 and clinical outcomes of infection during the 2017-18 Australian epidemic.
Anthony Chamings, Julian Druce, Leon Caly, Yano Yoga, Philip N Britton, Soren Alexandersen

Sci Rep· June 2019

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Detection and characterisation of canine astrovirus, canine parvovirus and canine papillomavirus in puppies using next generation sequencing.
Tarka Raj Bhatta, Anthony Chamings, Jessy Vibin, Soren Alexandersen

Sci Rep· March 2019

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The protective capacity of high payload FMDV A22 IRQ vaccine in sheep against direct-contact challenge with a heterologous, contemporary FMDV A strain from South East Asia.
Jacquelyn Horsington, Charles Nfon, Hilary Bittner, Peter A Durr, Nagendrakumar Singanallur, Soren Alexandersen

PLoS One· November 2018

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Metagenomics detection and characterisation of viruses in faecal samples from Australian wild birds.
Jessy Vibin, Anthony Chamings, Fiona Collier, Marcel Klaassen, Tiffanie M Nelson, Soren Alexandersen

Sci Rep· June 2018

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Detection and characterisation of coronaviruses in migratory and non-migratory Australian wild birds.
Anthony Chamings, Tiffanie M Nelson, Jessy Vibin, Michelle Wille, Marcel Klaassen, Soren Alexandersen

Sci Rep· April 2018

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Evolutionary and network analysis of virus sequences from infants infected with an Australian recombinant strain of human parechovirus type 3.
Soren Alexandersen, Tiffanie M Nelson, Jason Hodge, Julian Druce

Sci Rep· June 2017

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An outbreak of severe infections among Australian infants caused by a novel recombinant strain of human parechovirus type 3.
Tiffanie M Nelson, Peter Vuillermin, Jason Hodge, Julian Druce, David T Williams, Soren Alexandersen

Sci Rep· March 2017

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Epidemiological and Evolutionary Inference of the Transmission Network of the 2014 Highly Pathogenic Avian Influenza H5N2 Outbreak in British Columbia, Canada.
Wanhong Xu, Yohannes Berhane, Caroline Dubé, Binhua Liang, John Pasick, Soren Alexandersen

Sci Rep· August 2016

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