Publications by authors named "Srikumar Sengupta"

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Rapid changes in chromatin structure during dedifferentiation of primary hepatocytes in vitro.
Morten Seirup, Srikumar Sengupta, Scott Swanson, Brian E McIntosh, Mike Collins

Genomics· May 2022

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Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis.
Morten Seirup, Li-Fang Chu, Srikumar Sengupta, Ning Leng, Hadley Browder

PLoS One· November 2020

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Co-culture with mouse embryonic fibroblasts improves maintenance of metabolic function of human small hepatocyte progenitor cells.
Srikumar Sengupta, Brian Johnson, Morten Seirup, Hamisha Ardalani, Bret Duffin

Curr Res Toxicol· June 2020

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3-D culture and endothelial cells improve maturity of human pluripotent stem cell-derived hepatocytes.
Hamisha Ardalani, Srikumar Sengupta, Victoria Harms, Vernella Vickerman, James A Thomson

Acta Biomater· September 2019

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Aggregate culture of human embryonic stem cell-derived hepatocytes in suspension are an improved in vitro model for drug metabolism and toxicity testing.
Srikumar Sengupta, Brian Patrick Johnson, Scott Allen Swanson, Ron Stewart, Christopher Alan Bradfield

Toxicol Sci· July 2014

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Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.
Ron Stewart, Cynthia Alexander Rascón, Shulan Tian, Jeff Nie, Chris Barry, Srikumar Sengupta

PLoS Comput Biol· November 2013

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Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.
Srikumar Sengupta, Jennifer M Bolin, Victor Ruotti, Bao Kim Nguyen, James A Thomson

J Vis Exp· October 2011

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Highly consistent, fully representative mRNA-Seq libraries from ten nanograms of total RNA.
Srikumar Sengupta, Victor Ruotti, Jennifer Bolin, Angela Elwell, Alvaro Hernandez

Biotechniques· December 2010

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Statistical use of argonaute expression and RISC assembly in microRNA target identification.
Stephen A Stanhope, Srikumar Sengupta, Johan den Boon, Paul Ahlquist, Michael A Newton

PLoS Comput Biol· September 2009

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MicroRNA 92b controls the G1/S checkpoint gene p57 in human embryonic stem cells.
Srikumar Sengupta, Jeff Nie, Ryan J Wagner, Chuhu Yang, Ron Stewart

Stem Cells· July 2009

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The microRNAs of Epstein-Barr Virus are expressed at dramatically differing levels among cell lines.
Zachary L Pratt, Malika Kuzembayeva, Srikumar Sengupta, Bill Sugden

Virology· April 2009

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A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets.
Hairong Wei, Pei Fen Kuan, Shulan Tian, Chuhu Yang, Jeff Nie, Srikumar Sengupta

Nucleic Acids Res· May 2008

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MicroRNA 29c is down-regulated in nasopharyngeal carcinomas, up-regulating mRNAs encoding extracellular matrix proteins.
Srikumar Sengupta, Johan A den Boon, I-How Chen, Michael A Newton, Stephen A Stanhope

Proc Natl Acad Sci U S A· April 2008

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Fundamental differences in cell cycle deregulation in human papillomavirus-positive and human papillomavirus-negative head/neck and cervical cancers.
Dohun Pyeon, Michael A Newton, Paul F Lambert, Johan A den Boon, Srikumar Sengupta

Cancer Res· May 2007

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Genes involved in DNA repair and nitrosamine metabolism and those located on chromosome 14q32 are dysregulated in nasopharyngeal carcinoma.
Lori E Dodd, Srikumar Sengupta, I-How Chen, Johan A den Boon, Yu-Juen Cheng

Cancer Epidemiol Biomarkers Prev· November 2006

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Genome-wide expression profiling reveals EBV-associated inhibition of MHC class I expression in nasopharyngeal carcinoma.
Srikumar Sengupta, Johan A den Boon, I-How Chen, Michael A Newton, David B Dahl

Cancer Res· August 2006

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Molecular detection and identification of influenza viruses by oligonucleotide microarray hybridization.
Srikumar Sengupta, Kenji Onodera, Alexander Lai, Ulrich Melcher

J Clin Microbiol· October 2003

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