Publications by authors named "Stacey Andersen"

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Subclinical Fields of BRAF V600E-Mutant Melanocytes Populate Human Skin and Are Enriched Around Melanoma and Naevi.
Katie J Lee, Yung-Ching Kao, Amanda Jiang, Anastasia Prokofyeva, Lisa N Tom, Stacey Andersen

Br J Dermatol· October 2025

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Atlas of multilineage stem cell differentiation reveals TMEM88 as a developmental regulator of blood pressure.
Sophie Shen, Tessa Werner, Samuel W Lukowski, Stacey Andersen, Yuliangzi Sun

Nat Commun· February 2025

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High-risk clones that cause neonatal meningitis and association with recrudescent infection.
Nguyen Thi Khanh Nhu, Minh-Duy Phan, Steven J Hancock, Kate M Peters, Laura Alvarez-Fraga, Stacey B Andersen

Elife· April 2024

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Spatial Transcriptomics in Kidney Tissue.
Arti M Raghubar, Joanna Crawford, Kahli Jones, Pui Y Lam, Stacey B Andersen

Methods Mol Biol· February 2024

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HOPX-associated molecular programs control cardiomyocyte cell states underpinning cardiac structure and function.
Clayton E Friedman, Seth W Cheetham, Sumedha Negi, Richard J Mills, Masahito Ogawa, Stacey B Andersen

Dev Cell· January 2024

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Global Analysis of Transcription Start Sites and Enhancers in Endometrial Stromal Cells and Differences Associated with Endometriosis.
Sushma Marla, Sally Mortlock, Sohye Yoon, Joanna Crawford, Stacey Andersen

Cells· June 2023

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Spatially Resolved Transcriptomes of Mammalian Kidneys Illustrate the Molecular Complexity and Interactions of Functional Nephron Segments.
Arti M Raghubar, Duy T Pham, Xiao Tan, Laura F Grice, Joanna Crawford, Stacey B Andersen

Front Med (Lausanne)· July 2022

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Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune disease.
Seyhan Yazar, Jose Alquicira-Hernandez, Kristof Wing, Anne Senabouth, M Grace Gordon, Stacey Andersen

Science· April 2022

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Acquisition of murine splenic myeloid cells for protein and gene expression profiling by advanced flow cytometry and CITE-seq.
Inga Rødahl, James Gotley, Stacey B Andersen, Meihua Yu, Ahmed M Mehdi

STAR Protoc· December 2021

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Network mapping of primary CD34+ cells by Ampliseq based whole transcriptome targeted resequencing identifies unexplored differentiation regulatory relationships.
Jessica L Schwaber, Darren Korbie, Stacey Andersen, Erica Lin, Panagiotis K Chrysanthopoulos

PLoS One· July 2021

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Absence of Batf3 reveals a new dimension of cell state heterogeneity within conventional dendritic cells.
Samuel W Lukowski, Inga Rødahl, Samuel Kelly, Meihua Yu, James Gotley, Stacey B Andersen

iScience· May 2021

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Single-cell transcriptomics of alloreactive CD4+ T cells over time reveals divergent fates during gut graft-versus-host disease.
Jessica A Engel, Hyun Jae Lee, Cameron G Williams, Rachel Kuns, Stuart Olver, Stacey B Andersen

JCI Insight· July 2020

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Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing.
Anne Senabouth, Stacey Andersen, Qianyu Shi, Lei Shi, Feng Jiang

NAR Genom Bioinform· June 2020

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Genotype-free demultiplexing of pooled single-cell RNA-seq.
Jun Xu, Caitlin Falconer, Quan Nguyen, Joanna Crawford, Brett D McKinnon, Stacey Andersen

Genome Biol· December 2019

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ascend: R package for analysis of single-cell RNA-seq data.
Anne Senabouth, Samuel W Lukowski, Jose Alquicira Hernandez, Stacey B Andersen, Xin Mei

Gigascience· August 2019

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Single-Cell Transcriptional Profiling of Aortic Endothelium Identifies a Hierarchy from Endovascular Progenitors to Differentiated Cells.
Samuel W Lukowski, Jatin Patel, Stacey B Andersen, Seen-Ling Sim, Ho Yi Wong

Cell Rep· May 2019

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Shedding light: The importance of reverse transcription efficiency standards in data interpretation.
Jessica Schwaber, Stacey Andersen, Lars Nielsen

Biomol Detect Quantif· March 2019

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Detection of HPV E7 Transcription at Single-Cell Resolution in Epidermis.
Samuel W Lukowski, Zewen K Tuong, Katharina Noske, Anne Senabouth, Quan H Nguyen, Stacey B Andersen

J Invest Dermatol· December 2018

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Single-Cell Profiling Identifies Key Pathways Expressed by iPSCs Cultured in Different Commercial Media.
Maciej Daniszewski, Quan Nguyen, Hun S Chy, Vikrant Singh, Duncan E Crombie, Stacey B Andersen

iScience· September 2018

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Representing genetic variation with synthetic DNA standards.
Ira W Deveson, Wendy Y Chen, Ted Wong, Simon A Hardwick, Stacey B Andersen

Nat Methods· September 2016

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Spliced synthetic genes as internal controls in RNA sequencing experiments.
Simon A Hardwick, Wendy Y Chen, Ted Wong, Ira W Deveson, James Blackburn, Stacey B Andersen

Nat Methods· September 2016

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Development of a novel cell sorting method that samples population diversity in flow cytometry.
Geoffrey W Osborne, Stacey B Andersen, Francis L Battye

Cytometry A· November 2015

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Genome-wide discovery of human splicing branchpoints.
Tim R Mercer, Michael B Clark, Stacey B Andersen, Marion E Brunck, Wilfried Haerty

Genome Res· February 2015

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Absolute counting of neutrophils in whole blood using flow cytometry.
Marion E G Brunck, Stacey B Andersen, Nicholas E Timmins, Geoffrey W Osborne, Lars K Nielsen

Cytometry A· December 2014

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Exceptional memory performance in the Long Life Family Study.
Sandra Barral, Stephanie Cosentino, Rosann Costa, Stacey L Andersen, Kaare Christensen

Neurobiol Aging· November 2013

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