Publications by authors named "Stanley Shackney"

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Classifying the Progression of Ductal Carcinoma from Single-Cell Sampled Data via Integer Linear Programming: A Case Study.
Daniele Catanzaro, Stanley E Shackney, Alejandro A Schaffer, Russell Schwartz

IEEE/ACM Trans Comput Biol Bioinform· September 2017

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A Novel Subset of Human Tumors That Simultaneously Overexpress Multiple E2F-responsive Genes Found in Breast, Ovarian, and Prostate Cancers.
Stanley E Shackney, Salim Akhter Chowdhury, Russell Schwartz

Cancer Inform· November 2014

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Novel multisample scheme for inferring phylogenetic markers from whole genome tumor profiles.
Ayshwarya Subramanian, Stanley Shackney, Russell Schwartz

IEEE/ACM Trans Comput Biol Bioinform· September 2014

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Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics.
Salim Akhter Chowdhury, Stanley E Shackney, Kerstin Heselmeyer-Haddad, Thomas Ried, Alejandro A Schäffer

PLoS Comput Biol· July 2014

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Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations.
Salim Akhter Chowdhury, Stanley E Shackney, Kerstin Heselmeyer-Haddad, Thomas Ried, Alejandro A Schäffer

Bioinformatics· July 2013

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Inference of tumor phylogenies from genomic assays on heterogeneous samples.
Ayshwarya Subramanian, Stanley Shackney, Russell Schwartz

J Biomed Biotechnol· December 2012

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Robust unmixing of tumor states in array comparative genomic hybridization data.
David Tolliver, Charalampos Tsourakakis, Ayshwarya Subramanian, Stanley Shackney, Russell Schwartz

Bioinformatics· June 2010

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Applying unmixing to gene expression data for tumor phylogeny inference.
Russell Schwartz, Stanley E Shackney

BMC Bioinformatics· January 2010

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Network-based inference of cancer progression from microarray data.
Yongjin Park, Stanley Shackney, Russell Schwartz

IEEE/ACM Trans Comput Biol Bioinform· August 2009

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Response to trastuzumab, erlotinib, and bevacizumab, alone and in combination, is correlated with the level of human epidermal growth factor receptor-2 expression in human breast cancer cell lines.
David R Emlet, Kathryn A Brown, Deborah L Kociban, Agnese A Pollice, Charles A Smith, Stanley E Shackney

Mol Cancer Ther· October 2007

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Reconstructing tumor phylogenies from heterogeneous single-cell data.
Gregory Pennington, Charles A Smith, Stanley Shackney, Russell Schwartz

J Bioinform Comput Biol· April 2007

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A simple correction for cell autofluorescence for multiparameter cell-based analysis of human solid tumors.
Charles A Smith, Agnese Pollice, David Emlet, Stanley E Shackney

Cytometry B Clin Cytom· March 2006

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Guidelines for improving the reproducibility of quantitative multiparameter immunofluorescence measurements by laser scanning cytometry on fixed cell suspensions from human solid tumors.
Stanley Shackney, David R Emlet, Agnese Pollice, Charles Smith, Kathryn Brown

Cytometry B Clin Cytom· January 2006

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A suitable method for identifying cell aggregates in laser scanning cytometry listmode data for analyzing disaggregated cell suspensions obtained from human cancers.
Stanley E Shackney, Charles A Smith, Agnese A Pollice, Kathryn Brown, Deborah Kosiban

Cytometry B Clin Cytom· May 2004

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Intracellular patterns of Her-2/neu, ras, and ploidy abnormalities in primary human breast cancers predict postoperative clinical disease-free survival.
Stanley E Shackney, Charles A Smith, Agnese Pollice, Kathryn Brown, Roger Day

Clin Cancer Res· May 2004

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Molecular evolutionary patterns in breast cancer.
Stanley E Shackney, Jan F Silverman

Adv Anat Pathol· September 2003

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Reconstruction of geno-phenotypic evolutionary sequences from intracellular patterns of molecular abnormalities in human solid tumors.
Stanley E Shackney, Charles A Smith, Agnese A Pollice, Jan F Silverman

Methods Mol Med· May 2003

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Emerging technology and future developments in flow cytometry.
Carleton C Stewart, Charles Goolsby, Stanley E Shackney

Hematol Oncol Clin North Am· April 2002

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Prognostic value of immunohistochemical expressions of p53, HER-2/neu, and bcl-2 in stage I non-small-cell lung cancer.
Helen Han, Rodney J Landreneau, Tibetha S Santucci, Ming Y Tung, Robin S Macherey, Stanley E Shackney

Hum Pathol· January 2002

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