Publications by authors named "Stefan Filges"

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Digital sequencing is improved by using structured unique molecular identifiers.
Peter Micallef, Manuel Luna Santamaría, Mandy Escobar, Daniel Andersson, Tobias Österlund, Stefan Filges

Genome Biol· February 2025

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Deciphering the role of FUS::DDIT3 expression and tumor microenvironment in myxoid liposarcoma development.
Parmida Ranji, Emma Jonasson, Lisa Andersson, Stefan Filges, Manuel Luna Santamaría

J Transl Med· April 2024

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Tissue specificity of oncogenic BRAF targeted to lung and thyroid through a shared lineage factor.
Elin Schoultz, Shawn Liang, Therese Carlsson, Stefan Filges, Anders Ståhlberg

iScience· July 2023

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Extracellular vesicle DNA from human melanoma tissues contains cancer-specific mutations.
Rossella Crescitelli, Stefan Filges, Nasibeh Karimi, Ornella Urzì, Tamara Alonso-Agudo

Front Cell Dev Biol· December 2022

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UMIErrorCorrect and UMIAnalyzer: Software for Consensus Read Generation, Error Correction, and Visualization Using Unique Molecular Identifiers.
Tobias Österlund, Stefan Filges, Gustav Johansson, Anders Ståhlberg

Clin Chem· November 2022

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Digital Quantification of Chemical Oligonucleotide Synthesis Errors.
Stefan Filges, Pia Mouhanna, Anders Ståhlberg

Clin Chem· October 2021

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The PEMDAC phase 2 study of pembrolizumab and entinostat in patients with metastatic uveal melanoma.
Lars Ny, Henrik Jespersen, Joakim Karlsson, Samuel Alsén, Stefan Filges

Nat Commun· August 2021

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Response to BRAF/MEK Inhibition in A598_T599insV BRAF Mutated Melanoma.
Sara Bjursten, Christoffer Vannas, Stefan Filges, Florian Puls, Ankur Pandita

Case Rep Oncol· November 2019

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Detection of Circulating Tumor DNA in Plasma: A Potential Biomarker for Esophageal Adenocarcinoma.
Matthew Egyud, Mohamedtaki Tejani, Arjun Pennathur, James Luketich, Praveen Sridhar, Stefan Filges

Ann Thorac Surg· August 2019

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Multilaboratory Assessment of a New Reference Material for Quality Assurance of Cell-Free Tumor DNA Measurements.
Hua-Jun He, Erica V Stein, Yves Konigshofer, Thomas Forbes, Farol L Tomson, Stefan Filges

J Mol Diagn· July 2019

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Plasma circulating tumor DNA as a potential tool for disease monitoring in head and neck cancer.
Matthew Egyud, Praveen Sridhar, Anand Devaiah, Emiko Yamada, Stefanie Saunders, Stefan Filges

Head Neck· May 2019

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Impact of Polymerase Fidelity on Background Error Rates in Next-Generation Sequencing with Unique Molecular Identifiers/Barcodes.
Stefan Filges, Emiko Yamada, Anders Ståhlberg, Tony E Godfrey

Sci Rep· March 2019

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Considerations and quality controls when analyzing cell-free tumor DNA.
Gustav Johansson, Daniel Andersson, Stefan Filges, Junrui Li, Andreas Muth

Biomol Detect Quantif· March 2019

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Corrigendum to "Considerations and quality controls when analyzing cell-free tumor DNA" [Biomol. Detect. Quantif. 17 (2019) 100078].
Gustav Johansson, Daniel Andersson, Stefan Filges, Junrui Li, Andreas Muth

Biomol Detect Quantif· March 2019

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Elevated pyrimidine dimer formation at distinct genomic bases underlies promoter mutation hotspots in UV-exposed cancers.
Kerryn Elliott, Martin Boström, Stefan Filges, Markus Lindberg, Jimmy Van den Eynden

PLoS Genet· December 2018

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Recurrent promoter mutations in melanoma are defined by an extended context-specific mutational signature.
Nils Johan Fredriksson, Kerryn Elliott, Stefan Filges, Jimmy Van den Eynden, Anders Ståhlberg

PLoS Genet· May 2017

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Simple multiplexed PCR-based barcoding of DNA for ultrasensitive mutation detection by next-generation sequencing.
Anders Ståhlberg, Paul M Krzyzanowski, Matthew Egyud, Stefan Filges, Lincoln Stein

Nat Protoc· April 2017

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Modelling and analysis of a gene-regulatory feed-forward loop with basal expression of the second regulator.
Louisa Roselius, Dirk Langemann, Johannes Müller, Burkhard A Hense, Stefan Filges

J Theor Biol· December 2014

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