Publications by authors named "Stephan A Frye"

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Type IV minor pilin ComN predicted the USS-receptor in Pasteurellaceae.
Stian Aleksander Helsem, Kristian Alfsnes, Stephan A Frye, Alexander Hesselberg Løvestad, Ole Herman Ambur

Front Microbiol· November 2025

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Two different and robustly modeled DNA binding modes of Competence Protein ComP - systematic modeling with AlphaFold 3, RoseTTAFold2NA, Chai-1 and re-docking in HADDOCK.
Stian Aleksander Helsem, Kristian Alfsnes, Stephan A Frye, Alexander Hesselberg Løvestad, Ole Herman Ambur

PLoS One· May 2025

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Ultrafast and Cost-Effective Pathogen Identification and Resistance Gene Detection in a Clinical Setting Using Nanopore Flongle Sequencing.
Ekaterina Avershina, Stephan A Frye, Jawad Ali, Arne M Taxt, Rafi Ahmad

Front Microbiol· March 2022

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AMR-Diag: Neural network based genotype-to-phenotype prediction of resistance towards β-lactams in and .
Ekaterina Avershina, Priyanka Sharma, Arne M Taxt, Harpreet Singh, Stephan A Frye

Comput Struct Biotechnol J· March 2021

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Rapid identification of pathogens, antibiotic resistance genes and plasmids in blood cultures by nanopore sequencing.
Arne M Taxt, Ekaterina Avershina, Stephan A Frye, Umaer Naseer, Rafi Ahmad

Sci Rep· May 2020

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A genomic view of experimental intraspecies and interspecies transformation of a rifampicin-resistance allele into Neisseria meningitidis.
Kristian Alfsnes, Stephan A Frye, Jens Eriksson, Vegard Eldholm, Ola Brønstad Brynildsrud

Microb Genom· November 2018

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The helicase DinG responds to stress due to DNA double strand breaks.
Stephan A Frye, Getachew Tesfaye Beyene, Amine Namouchi, Marta Gómez-Muñoz, Håvard Homberset

PLoS One· December 2017

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DprA from Neisseria meningitidis: properties and role in natural competence for transformation.
Eirik Hovland, Getachew Tesfaye Beyene, Stephan A Frye, Håvard Homberset, Seetha V Balasingham

Microbiology (Reading)· July 2017

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Characterization of the Neisseria meningitidis Helicase RecG.
Getachew Tesfaye Beyene, Seetha V Balasingham, Stephan A Frye, Amine Namouchi, Håvard Homberset

PLoS One· May 2017

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The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress.
Amine Namouchi, Marta Gómez-Muñoz, Stephan A Frye, Line Victoria Moen, Torbjørn Rognes

BMC Genomics· October 2016

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The Inner Membrane Protein PilG Interacts with DNA and the Secretin PilQ in Transformation.
Stephan A Frye, Emma Lång, Getachew Tesfaye Beyene, Seetha V Balasingham, Håvard Homberset

PLoS One· May 2016

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Reduced expression of aquaporins in human intestinal mucosa in early stage inflammatory bowel disease.
Petr Ricanek, Lisa K Lunde, Stephan A Frye, Mari Støen, Ståle Nygård

Clin Exp Gastroenterol· January 2015

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Dialects of the DNA uptake sequence in Neisseriaceae.
Stephan A Frye, Mariann Nilsen, Tone Tønjum, Ole Herman Ambur

PLoS Genet· April 2013

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Restriction and sequence alterations affect DNA uptake sequence-dependent transformation in Neisseria meningitidis.
Ole Herman Ambur, Stephan A Frye, Mariann Nilsen, Eirik Hovland, Tone Tønjum

PLoS One· November 2012

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Gut bacterial profile in patients newly diagnosed with treatment-naïve Crohn's disease.
Petr Ricanek, Sheba M Lothe, Stephan A Frye, Andreas Rydning, Morten H Vatn

Clin Exp Gastroenterol· October 2012

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DNA base excision repair gene polymorphisms modulate human cognitive performance and decline during normal life span.
Meryl S Lillenes, Thomas Espeseth, Mari Støen, Astri J Lundervold, Stephan A Frye

Mech Ageing Dev· August 2011

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Structure-function relationships of the competence lipoprotein ComL and SSB in meningococcal transformation.
Afsaneh V Benam, Emma Lång, Kristian Alfsnes, Burkhard Fleckenstein, Alexander D Rowe, Stephan A Frye

Microbiology (Reading)· May 2011

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Molecular diagnostics in tuberculosis: basis and implications for therapy.
Seetha V Balasingham, Tonje Davidsen, Irena Szpinda, Stephan A Frye, Tone Tønjum

Mol Diagn Ther· October 2009

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Genome dynamics in major bacterial pathogens.
Ole Herman Ambur, Tonje Davidsen, Stephan A Frye, Seetha V Balasingham, Karin Lagesen

FEMS Microbiol Rev· May 2009

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Identification of neisserial DNA binding components.
Emma Lång, Kristine Haugen, Burkhard Fleckenstein, Håvard Homberset, Stephan A Frye

Microbiology (Reading)· March 2009

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Characterization of the meningococcal DNA glycosylase Fpg involved in base excision repair.
Katrina L Tibballs, Ole Herman Ambur, Kristian Alfsnes, Håvard Homberset, Stephan A Frye

BMC Microbiol· January 2009

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Interactions between the lipoprotein PilP and the secretin PilQ in Neisseria meningitidis.
Seetha V Balasingham, Richard F Collins, Reza Assalkhou, Håvard Homberset, Stephan A Frye

J Bacteriol· August 2007

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The outer membrane secretin PilQ from Neisseria meningitidis binds DNA.
Reza Assalkhou, Seetha Balasingham, Richard F Collins, Stephan A Frye, Tonje Davidsen

Microbiology (Reading)· May 2007

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New functional identity for the DNA uptake sequence in transformation and its presence in transcriptional terminators.
O Herman Ambur, Stephan A Frye, Tone Tønjum

J Bacteriol· March 2007

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Topology of the outer-membrane secretin PilQ from Neisseria meningitidis.
Stephan A Frye, Reza Assalkhou, Richard F Collins, Robert C Ford, Christoffer Petersson

Microbiology (Reading)· December 2006

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